Toward better drug discovery with knowledge graph

X Zeng, X Tu, Y Liu, X Fu, Y Su - Current opinion in structural biology, 2022 - Elsevier
Drug discovery is the process of new drug identification. This process is driven by the
increasing data from existing chemical libraries and data banks. The knowledge graph is …

Using phecodes for research with the electronic health record: from PheWAS to PheRS

L Bastarache - Annual review of biomedical data science, 2021 - annualreviews.org
Electronic health records (EHRs) are a rich source of data for researchers, but extracting
meaningful information out of this highly complex data source is challenging. Phecodes …

[HTML][HTML] Building a knowledge graph to enable precision medicine

P Chandak, K Huang, M Zitnik - Scientific Data, 2023 - nature.com
Developing personalized diagnostic strategies and targeted treatments requires a deep
understanding of disease biology and the ability to dissect the relationship between …

[PDF][PDF] VarSome: the human genomic variant search engine

C Kopanos, V Tsiolkas, A Kouris, CE Chapple… - …, 2019 - academic.oup.com
VarSome. com is a search engine, aggregator and impact analysis tool for human genetic
variation and a community-driven project aiming at sharing global expertise on human …

[HTML][HTML] Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes

JT Reese, H Blau, E Casiraghi, T Bergquist… - …, 2023 - thelancet.com
Background Stratification of patients with post-acute sequelae of SARS-CoV-2 infection
(PASC, or long COVID) would allow precision clinical management strategies. However …

OMIM. org: leveraging knowledge across phenotype–gene relationships

JS Amberger, CA Bocchini, AF Scott… - Nucleic acids …, 2019 - academic.oup.com
Abstract For over 50 years Mendelian Inheritance in Man has chronicled the collective
knowledge of the field of medical genetics. It initially cataloged the known X-linked …

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources

S Köhler, L Carmody, N Vasilevsky… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Human Phenotype Ontology (HPO)—a standardized vocabulary of phenotypic
abnormalities associated with 7000+ diseases—is used by thousands of researchers …

ClinVar: improving access to variant interpretations and supporting evidence

MJ Landrum, JM Lee, M Benson, GR Brown… - Nucleic acids …, 2018 - academic.oup.com
Abstract ClinVar (https://www. ncbi. nlm. nih. gov/clinvar/) is a freely available, public archive
of human genetic variants and interpretations of their significance to disease, maintained at …

PhenoScore quantifies phenotypic variation for rare genetic diseases by combining facial analysis with other clinical features using a machine-learning framework

AJM Dingemans, M Hinne, KMG Truijen, L Goltstein… - Nature Genetics, 2023 - nature.com
Several molecular and phenotypic algorithms exist that establish genotype–phenotype
correlations, including facial recognition tools. However, no unified framework that …

Open Targets Platform: new developments and updates two years on

D Carvalho-Silva, A Pierleoni, M Pignatelli… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Open Targets Platform integrates evidence from genetics, genomics,
transcriptomics, drugs, animal models and scientific literature to score and rank target …