Chromatin accessibility profiling by ATAC-seq

FC Grandi, H Modi, L Kampman, MR Corces - Nature protocols, 2022 - nature.com
The assay for transposase-accessible chromatin using sequencing (ATAC-seq) provides a
simple and scalable way to detect the unique chromatin landscape associated with a cell …

[HTML][HTML] Mitochondrial functionality in male fertility: from spermatogenesis to fertilization

YJ Park, MG Pang - Antioxidants, 2021 - mdpi.com
Mitochondria are structurally and functionally distinct organelles that produce adenosine
triphosphate (ATP) through oxidative phosphorylation (OXPHOS), to provide energy to …

Construction of a human cell landscape at single-cell level

X Han, Z Zhou, L Fei, H Sun, R Wang, Y Chen, H Chen… - Nature, 2020 - nature.com
Single-cell analysis is a valuable tool for dissecting cellular heterogeneity in complex
systems. However, a comprehensive single-cell atlas has not been achieved for humans …

CellMarker: a manually curated resource of cell markers in human and mouse

X Zhang, Y Lan, J Xu, F Quan, E Zhao… - Nucleic acids …, 2019 - academic.oup.com
One of the most fundamental questions in biology is what types of cells form different tissues
and organs in a functionally coordinated fashion. Larger-scale single-cell sequencing and …

[HTML][HTML] The adult human testis transcriptional cell atlas

J Guo, EJ Grow, H Mlcochova, GJ Maher, C Lindskog… - Cell research, 2018 - nature.com
Human adult spermatogenesis balances spermatogonial stem cell (SSC) self-renewal and
differentiation, alongside complex germ cell-niche interactions, to ensure long-term fertility …

[HTML][HTML] The mammalian spermatogenesis single-cell transcriptome, from spermatogonial stem cells to spermatids

BP Hermann, K Cheng, A Singh, L Roa-De La Cruz… - Cell reports, 2018 - cell.com
Spermatogenesis is a complex and dynamic cellular differentiation process critical to male
reproduction and sustained by spermatogonial stem cells (SSCs). Although patterns of gene …

[HTML][HTML] A comprehensive roadmap of murine spermatogenesis defined by single-cell RNA-seq

CD Green, Q Ma, GL Manske, AN Shami, X Zheng… - Developmental cell, 2018 - cell.com
Spermatogenesis requires intricate interactions between the germline and somatic cells.
Within a given cross section of a seminiferous tubule, multiple germ and somatic cell types …

[HTML][HTML] Single-cell RNA sequencing analysis reveals sequential cell fate transition during human spermatogenesis

M Wang, X Liu, G Chang, Y Chen, G An, L Yan, S Gao… - Cell stem cell, 2018 - cell.com
Spermatogenesis generates mature male gametes and is critical for the proper transmission
of genetic information between generations. However, the developmental landscapes of …

[HTML][HTML] Single-cell RNA-seq reveals the diversity of trophoblast subtypes and patterns of differentiation in the human placenta

Y Liu, X Fan, R Wang, X Lu, YL Dang, H Wang, HY Lin… - Cell research, 2018 - nature.com
The placenta is crucial for a successful pregnancy and the health of both the fetus and the
pregnant woman. However, how the human trophoblast lineage is regulated, including the …

[HTML][HTML] Single-cell analysis of human testis aging and correlation with elevated body mass index

X Nie, SK Munyoki, M Sukhwani, N Schmid, A Missel… - Developmental cell, 2022 - cell.com
Aging men display reduced reproductive health; however, testis aging is poorly understood
at the molecular and genomic levels. Here, we utilized single-cell RNA-seq to profile over …