[HTML][HTML] The cancer driver genes IDH1/2, JARID1C/ KDM5C, and UTX/ KDM6A: crosstalk between histone demethylation and hypoxic reprogramming in cancer …
Recent studies on mutations in cancer genomes have distinguished driver mutations from
passenger mutations, which occur as byproducts of cancer development. The cancer …
passenger mutations, which occur as byproducts of cancer development. The cancer …
High‐throughput sequencing for biology and medicine
WW Soon, M Hariharan, MP Snyder - Molecular systems biology, 2013 - embopress.org
Advances in genome sequencing have progressed at a rapid pace, with increased
throughput accompanied by plunging costs. But these advances go far beyond faster and …
throughput accompanied by plunging costs. But these advances go far beyond faster and …
[HTML][HTML] Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer
S Müller, S Raulefs, P Bruns, F Afonso-Grunz… - Molecular cancer, 2015 - Springer
Background Previous studies identified microRNAs (miRNAs) and messenger RNAs with
significantly different expression between normal pancreas and pancreatic cancer (PDAC) …
significantly different expression between normal pancreas and pancreatic cancer (PDAC) …
Genome‐wide DNA methylation patterns in pancreatic ductal adenocarcinoma reveal epigenetic deregulation of SLIT‐ROBO, ITGA2 and MET signaling
The importance of epigenetic modifications such as DNA methylation in tumorigenesis is
increasingly being appreciated. To define the genome‐wide pattern of DNA methylation in …
increasingly being appreciated. To define the genome‐wide pattern of DNA methylation in …
Genetic analyses of isolated high‐grade pancreatic intraepithelial neoplasia (HG‐PanIN) reveal paucity of alterations in TP53 and SMAD4
W Hosoda, P Chianchiano, JF Griffin… - The Journal of …, 2017 - Wiley Online Library
High‐grade pancreatic intraepithelial neoplasia (HG‐PanIN) is the major precursor of
pancreatic ductal adenocarcinoma (PDAC) and is an ideal target for early detection. To …
pancreatic ductal adenocarcinoma (PDAC) and is an ideal target for early detection. To …
Driver mutations of cancer epigenomes
Epigenetic alterations are associated with all aspects of cancer, from tumor initiation to
cancer progression and metastasis. It is now well understood that both losses and gains of …
cancer progression and metastasis. It is now well understood that both losses and gains of …
LINE-1 expression and retrotransposition in Barrett's esophagus and esophageal carcinoma
TT Doucet-O'Hare, N Rodić… - Proceedings of the …, 2015 - National Acad Sciences
Barrett's esophagus (BE) is a common disease in which the lining of the esophagus
transitions from stratified squamous epithelium to metaplastic columnar epithelium that …
transitions from stratified squamous epithelium to metaplastic columnar epithelium that …
From human genome to cancer genome: the first decade
DA Wheeler, L Wang - Genome research, 2013 - genome.cshlp.org
The realization that cancer progression required the participation of cellular genes provided
one of several key rationales, in 1986, for embarking on the human genome project. Only …
one of several key rationales, in 1986, for embarking on the human genome project. Only …
Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events
Lung cancer is a highly heterogeneous disease in terms of both underlying genetic lesions
and response to therapeutic treatments. We performed deep whole-genome sequencing …
and response to therapeutic treatments. We performed deep whole-genome sequencing …
[HTML][HTML] A systematic approach to identify novel cancer drug targets using machine learning, inhibitor design and high-throughput screening
We present an integrated approach that predicts and validates novel anti-cancer drug
targets. We first built a classifier that integrates a variety of genomic and systematic datasets …
targets. We first built a classifier that integrates a variety of genomic and systematic datasets …