[HTML][HTML] The cancer driver genes IDH1/2, JARID1C/ KDM5C, and UTX/ KDM6A: crosstalk between histone demethylation and hypoxic reprogramming in cancer …

S Chang, S Yim, H Park - Experimental & molecular medicine, 2019 - nature.com
Recent studies on mutations in cancer genomes have distinguished driver mutations from
passenger mutations, which occur as byproducts of cancer development. The cancer …

High‐throughput sequencing for biology and medicine

WW Soon, M Hariharan, MP Snyder - Molecular systems biology, 2013 - embopress.org
Advances in genome sequencing have progressed at a rapid pace, with increased
throughput accompanied by plunging costs. But these advances go far beyond faster and …

[HTML][HTML] Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer

S Müller, S Raulefs, P Bruns, F Afonso-Grunz… - Molecular cancer, 2015 - Springer
Background Previous studies identified microRNAs (miRNAs) and messenger RNAs with
significantly different expression between normal pancreas and pancreatic cancer (PDAC) …

Genome‐wide DNA methylation patterns in pancreatic ductal adenocarcinoma reveal epigenetic deregulation of SLIT‐ROBO, ITGA2 and MET signaling

K Nones, N Waddell, S Song, AM Patch… - … journal of cancer, 2014 - Wiley Online Library
The importance of epigenetic modifications such as DNA methylation in tumorigenesis is
increasingly being appreciated. To define the genome‐wide pattern of DNA methylation in …

Genetic analyses of isolated high‐grade pancreatic intraepithelial neoplasia (HG‐PanIN) reveal paucity of alterations in TP53 and SMAD4

W Hosoda, P Chianchiano, JF Griffin… - The Journal of …, 2017 - Wiley Online Library
High‐grade pancreatic intraepithelial neoplasia (HG‐PanIN) is the major precursor of
pancreatic ductal adenocarcinoma (PDAC) and is an ideal target for early detection. To …

Driver mutations of cancer epigenomes

DM Roy, LA Walsh, TA Chan - Protein & cell, 2014 - academic.oup.com
Epigenetic alterations are associated with all aspects of cancer, from tumor initiation to
cancer progression and metastasis. It is now well understood that both losses and gains of …

LINE-1 expression and retrotransposition in Barrett's esophagus and esophageal carcinoma

TT Doucet-O'Hare, N Rodić… - Proceedings of the …, 2015 - National Acad Sciences
Barrett's esophagus (BE) is a common disease in which the lining of the esophagus
transitions from stratified squamous epithelium to metaplastic columnar epithelium that …

From human genome to cancer genome: the first decade

DA Wheeler, L Wang - Genome research, 2013 - genome.cshlp.org
The realization that cancer progression required the participation of cellular genes provided
one of several key rationales, in 1986, for embarking on the human genome project. Only …

Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events

J Liu, W Lee, Z Jiang, Z Chen, S Jhunjhunwala… - Genome …, 2012 - genome.cshlp.org
Lung cancer is a highly heterogeneous disease in terms of both underlying genetic lesions
and response to therapeutic treatments. We performed deep whole-genome sequencing …

[HTML][HTML] A systematic approach to identify novel cancer drug targets using machine learning, inhibitor design and high-throughput screening

J Jeon, S Nim, J Teyra, A Datti, JL Wrana, SS Sidhu… - Genome medicine, 2014 - Springer
We present an integrated approach that predicts and validates novel anti-cancer drug
targets. We first built a classifier that integrates a variety of genomic and systematic datasets …