Optimal auto-regulation to minimize first-passage time variability in protein level

KR Ghusinga, PW Fok, A Singh - 2015 American Control …, 2015 - ieeexplore.ieee.org
The timing of cellular events is inherently random because of the probabilistic nature of gene
expression. Yet cells manage to have precise timing of important events. Here, we study …

Regulating gene expression to achieve temporal precision

KR Ghusinga, A Singh - IFAC-PapersOnLine, 2021 - Elsevier
Cellular response to a stimulus is often triggered by accumulation of an appropriate gene
product up to a critical threshold. How cells regulate gene expression to achieve precision in …

Avoiding the All-or-None Response in Gene Expression During E. coli Continuous Cultivation Based on the On-Line Monitoring of Cell Phenotypic Switching …

F Delvigne, L Henrion, V Vandenbroucke… - … Bodies: Methods and …, 2023 - Springer
Different expression vectors are available for the effective production of recombinant
proteins by bacterial populations. However, the productivity of such systems is limited by the …

Controlling noise in the timing of intracellular events: A first-passage time approach

KR Ghusinga, JJ Dennehy, A Singh - bioRxiv, 2016 - biorxiv.org
In the noisy cellular environment, gene products are subject to inherent random fluctuations
in copy numbers over time. How cells ensure precision in the timing of key intracellular …

What influences selection of native phosphorelay architectures?

R Alves, B Salvado, R Milo, E Vilaprinyo, A Sorribas - bioRxiv, 2020 - biorxiv.org
Phosphorelays are signal transduction circuits that combine four different phosphorylatable
protein domains for sensing environmental changes and use that information to adjust …

Clustering of temporal gene expression data with mixtures of mixed effects models

D Lu - 2019 - open.bu.edu
While time-dependent processes are important to biological functions, methods to leverage
temporal information from large data have remained computationally challenging. In …

[图书][B] On Moments and Timing-Stochastic Analysis of Biochemical Systems

KR Ghusinga - 2018 - search.proquest.com
At the level of individual living cells, key species such as genes, mRNAs, and proteins are
typically present in small numbers. Consequently, the biochemical reactions involving these …

[引用][C] A statistical and mechanistic, model-based analysis of spindle assembly checkpoint signalling

EM Geissen - 2017