Pattern transformation with DNA circuits

SM Chirieleison, PB Allen, ZB Simpson, AD Ellington… - Nature …, 2013 - nature.com
Readily programmable chemical networks are important tools as the scope of chemistry
expands from individual molecules to larger molecular systems. Although many complex …

Digital biosensors with built-in logic for biomedical applications—biosensors based on a biocomputing concept

J Wang, E Katz - Analytical and bioanalytical chemistry, 2010 - Springer
This article reviews biomolecular logic systems for bioanalytical applications, specifically
concentrating on the prospects and fundamental and practical challenges of designing …

Coiled-coil design: updated and upgraded

DN Woolfson - Fibrous Proteins: Structures and Mechanisms, 2017 - Springer
Abstract α-Helical coiled coils are ubiquitous protein-folding and protein-interaction domains
in which two or more α-helical chains come together to form bundles. Through a …

[PDF][PDF] From virtual to physical: integration of chemical logic gates

R Guliyev, S Ozturk, Z Kostereli… - Angewandte Chemie …, 2011 - repository.bilkent.edu.tr
Logic gates are fundamental building blocks of silicon circuitry. Current technology used in
integrated circuit design is fast approaching its physical limits, and this “impending doom” …

Systems chemistry: logic gates based on the stimuli-responsive gel–sol transition of a crown ether-functionalized bis (urea) gelator

Z Qi, PM de Molina, W Jiang, Q Wang… - Chemical …, 2012 - pubs.rsc.org
A quite simple, achiral benzo-21-crown-7-substituted bis (urea) low-molecular weight
gelator hierarchically assembles into helical fibrils, which further develop into bundles and …

Time-dependent pulses of lithium ions in cascaded signaling and out-of-equilibrium (supra) molecular logic

A Ghosh, I Paul, M Schmittel - Journal of the American Chemical …, 2019 - ACS Publications
The present paper adds the time domain to chemical ion translocation and (supra)
molecular logic. When the self-sorted system of [Zn (1)] 2++[Li (2)]++ 3 (composed of …

Transient fibril structures facilitating nonenzymatic self-replication

B Rubinov, N Wagner, M Matmor, O Regev… - ACS …, 2012 - ACS Publications
An emerging new direction of research focuses on developing “self-synthesizing materials”,
those supramolecular structures that can promote their own formation by accelerating the …

Novel fluorescent probes for sequential detection of Cu2+ and citrate anion and application in living cell imaging

Y Chang, J Fu, K Yao, B Li, K Xu, X Pang - Dyes and Pigments, 2019 - Elsevier
Three novel fluorescent probes (L1, L2 and L3) derived from 2-hydroxyphenyl-4-
chloromethyloxazole 8-ydroxyquinaldine were designed and synthesized. The probes …

Computing arithmetic functions using immobilised enzymatic reaction networks

NM Ivanov, MG Baltussen, CLF Regueiro… - Angewandte …, 2023 - Wiley Online Library
Living systems use enzymatic reaction networks to process biochemical information and
make decisions in response to external or internal stimuli. Herein, we present a modular and …

Reversible multicomponent AND gate triggered by stoichiometric chemical pulses commands the self-assembly and actuation of catalytic machinery

PK Biswas, S Saha, S Gaikwad… - Journal of the American …, 2020 - ACS Publications
The present work demonstrates the operation of a reversible supramolecular gate, ie, an
ensemble of various components linked by chemical communication, which is triggered by …