Prediction of effector protein structures from fungal phytopathogens enables evolutionary analyses

K Seong, KV Krasileva - Nature Microbiology, 2023 - nature.com
Elucidating the similarity and diversity of pathogen effectors is critical to understand their
evolution across fungal phytopathogens. However, rapid divergence that diminishes …

Application of high-throughput sequencing technologies and analytical tools for pathogen detection in urban water systems: Progress and future perspectives

Y Zhao, F Huang, W Wang, R Gao, L Fan… - Science of the Total …, 2023 - Elsevier
The ubiquitous presence of pathogenic microorganisms, such as viruses, bacteria, fungi,
and protozoa, in urban water systems poses a significant risk to public health. The …

The 2022 Nucleic Acids Research database issue and the online molecular biology database collection

DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …

Integrated molecular and bioinformatics approaches for disease-related genes in plants

A Joshi, HG Song, SY Yang, JH Lee - Plants, 2023 - mdpi.com
Modern plant pathology relies on bioinformatics approaches to create novel plant disease
diagnostic tools. In recent years, a significant amount of biological data has been generated …

Genome-resolved metatranscriptomics reveals conserved root colonization determinants in a synthetic microbiota

N Vannier, F Mesny, F Getzke, G Chesneau… - Nature …, 2023 - nature.com
The identification of processes activated by specific microbes during microbiota colonization
of plant roots has been hampered by technical constraints in metatranscriptomics. These …

Ensembl 2024

PW Harrison, MR Amode… - Nucleic acids …, 2024 - academic.oup.com
Abstract Ensembl (https://www. ensembl. org) is a freely available genomic resource that has
produced high-quality annotations, tools, and services for vertebrates and model organisms …

Strategies for tailoring functional microbial synthetic communities

J Jing, P Garbeva, JM Raaijmakers… - The ISME …, 2024 - academic.oup.com
Natural ecosystems harbor a huge reservoir of taxonomically diverse microbes that are
important for plant growth and health. The vast diversity of soil microorganisms and their …

Virulence factors of the genus Fusarium with targets in plants

A Gutiérrez-Sánchez, J Plasencia… - Microbiological …, 2023 - Elsevier
Fusarium spp. comprise various species of filamentous fungi that cause severe diseases in
plant crops of both agricultural and forestry interest. These plant pathogens produce a wide …

[HTML][HTML] Protein network analysis and functional enrichment via computational biotechnology unravel molecular and pathogenic mechanisms of kidney stone disease

P Peerapen, V Thongboonkerd - biomedical journal, 2023 - Elsevier
Mass spectrometry-based proteomics has been extensively applied to current biomedical
research. From such large-scale identification of proteins, several computational tools have …

Mobile genetic elements mediate the cross-media transmission of antibiotic resistance genes from pig farms and their risks

Z Yu, Z Liu, L Sun, C Dong, Y Jin, B Hu… - Science of The Total …, 2024 - Elsevier
Manure composting in traditional small-scale pig farms leads to the migration and diffusion
of antibiotics and antibiotics resistance genes (ARGs) along the chain of transmission to the …