Artificial intelligence in the prediction of protein–ligand interactions: recent advances and future directions
New drug production, from target identification to marketing approval, takes over 12 years
and can cost around $2.6 billion. Furthermore, the COVID-19 pandemic has unveiled the …
and can cost around $2.6 billion. Furthermore, the COVID-19 pandemic has unveiled the …
Application advances of deep learning methods for de novo drug design and molecular dynamics simulation
De novo drug design is a stationary way to build novel ligands in the confined pocket of
receptor by assembling the atoms or fragments, while molecular dynamics (MD) simulation …
receptor by assembling the atoms or fragments, while molecular dynamics (MD) simulation …
Geometric interaction graph neural network for predicting protein–ligand binding affinities from 3d structures (gign)
Predicting protein–ligand binding affinities (PLAs) is a core problem in drug discovery.
Recent advances have shown great potential in applying machine learning (ML) for PLA …
Recent advances have shown great potential in applying machine learning (ML) for PLA …
GraphscoreDTA: optimized graph neural network for protein–ligand binding affinity prediction
Motivation Computational approaches for identifying the protein–ligand binding affinity can
greatly facilitate drug discovery and development. At present, many deep learning-based …
greatly facilitate drug discovery and development. At present, many deep learning-based …
Hac-net: A hybrid attention-based convolutional neural network for highly accurate protein–ligand binding affinity prediction
GW Kyro, RI Brent, VS Batista - Journal of Chemical Information …, 2023 - ACS Publications
Applying deep learning concepts from image detection and graph theory has greatly
advanced protein–ligand binding affinity prediction, a challenge with enormous ramifications …
advanced protein–ligand binding affinity prediction, a challenge with enormous ramifications …
BACPI: a bi-directional attention neural network for compound–protein interaction and binding affinity prediction
Motivation The identification of compound–protein interactions (CPIs) is an essential step in
the process of drug discovery. The experimental determination of CPIs is known for a large …
the process of drug discovery. The experimental determination of CPIs is known for a large …
CAPLA: improved prediction of protein–ligand binding affinity by a deep learning approach based on a cross-attention mechanism
Motivation Accurate and rapid prediction of protein–ligand binding affinity is a great
challenge currently encountered in drug discovery. Recent advances have manifested a …
challenge currently encountered in drug discovery. Recent advances have manifested a …
Planet: a multi-objective graph neural network model for protein–ligand binding affinity prediction
X Zhang, H Gao, H Wang, Z Chen… - Journal of Chemical …, 2023 - ACS Publications
Predicting protein–ligand binding affinity is a central issue in drug design. Various deep
learning models have been published in recent years, where many of them rely on 3D …
learning models have been published in recent years, where many of them rely on 3D …
[HTML][HTML] DTITR: End-to-end drug–target binding affinity prediction with transformers
The accurate identification of Drug–Target Interactions (DTIs) remains a critical turning point
in drug discovery and understanding of the binding process. Despite recent advances in …
in drug discovery and understanding of the binding process. Despite recent advances in …
Hierarchical graph representation learning for the prediction of drug-target binding affinity
Computationally predicting drug-target binding affinity (DTA) has attracted increasing
attention due to its benefit for accelerating drug discovery. Currently, numerous deep …
attention due to its benefit for accelerating drug discovery. Currently, numerous deep …