TFRegNCI: Interpretable Noncovalent Interaction Correction Multimodal Based on Transformer Encoder Fusion

D Wang, W Li, X Dong, H Li, LH Hu - Journal of Chemical …, 2023 - ACS Publications
The interpretability is an important issue for end-to-end learning models. Motivated by
computer vision algorithms, an interpretable noncovalent interaction (NCI) correction …

De novo drug design framework based on mathematical programming method and deep learning model

Y Zhao, Q Liu, X Wu, L Zhang, J Du, Q Meng - AIChE Journal, 2022 - Wiley Online Library
Small‐molecule drugs are of significant importance to human health. The use of efficient
model‐based de novo drug design method is an option worth considering for expediting the …

A comprehensive review of the recent advances on predicting drug-target affinity based on deep learning

X Zeng, SJ Li, SQ Lv, ML Wen, Y Li - Frontiers in Pharmacology, 2024 - frontiersin.org
Accurate calculation of drug-target affinity (DTA) is crucial for various applications in the
pharmaceutical industry, including drug screening, design, and repurposing. However …

PocketAnchor: Learning structure-based pocket representations for protein-ligand interaction prediction

S Li, T Tian, Z Zhang, Z Zou, D Zhao, J Zeng - Cell Systems, 2023 - cell.com
Protein-ligand interactions are essential for cellular activities and drug discovery processes.
Appropriately and effectively representing protein features is of vital importance for …

A Multi-perspective Model for Protein–Ligand-Binding Affinity Prediction

X Zhang, Y Li, J Wang, G Xu, Y Gu - … Sciences: Computational Life …, 2023 - Springer
Gathering information from multi-perspective graphs is an essential issue for many
applications especially for protein–ligand-binding affinity prediction. Most of traditional …

Prediction of Drug-Target Binding Affinity Based on Deep Learning Models

H Zhang, X Liu, W Cheng, T Wang, Y Chen - Computers in Biology and …, 2024 - Elsevier
The prediction of drug-target binding affinity (DTA) plays an important role in drug discovery.
Computerized virtual screening techniques have been used for DTA prediction, greatly …

MMDTA: A Multimodal Deep Model for Drug-Target Affinity with a Hybrid Fusion Strategy

KY Zhong, ML Wen, FF Meng, X Li… - Journal of Chemical …, 2023 - ACS Publications
The prediction of the drug-target affinity (DTA) plays an important role in evaluating
molecular druggability. Although deep learning-based models for DTA prediction have been …

Design and synthesis of novel insecticidal 3-isothiazolols as potential antagonists of insect GABA receptors

Z Ye, C Zhou, M Jiang, X Luo, F Wu, Z Xu… - New Journal of …, 2024 - pubs.rsc.org
The ionotropic γ-aminobutyric acid (GABA) receptor (iGABAR) is an important target of
agricultural insecticides. Our previous studies indicated that competitive antagonists (CAs) of …

HiSIF-DTA: A Hierarchical Semantic Information Fusion Framework for Drug-Target Affinity Prediction

X Bi, S Zhang, W Ma, H Jiang… - IEEE Journal of …, 2023 - ieeexplore.ieee.org
Accurately identifying drug-target affinity (DTA) plays a significant role in promoting drug
discovery and has attracted increasing attention in recent years. Exploring appropriate …

Machine Learning Empowering Drug Discovery: Applications, Opportunities and Challenges

X Qi, Y Zhao, Z Qi, S Hou, J Chen - Molecules, 2024 - mdpi.com
Drug discovery plays a critical role in advancing human health by developing new
medications and treatments to combat diseases. How to accelerate the pace and reduce the …