Neighborhood complex based machine learning (NCML) models for drug design
The importance of drug design cannot be overemphasized. Recently, artificial intelligence
(AI) based drug design has begun to gain momentum due to the great advancement in …
(AI) based drug design has begun to gain momentum due to the great advancement in …
An ensemble‐based approach to estimate confidence of predicted protein–ligand binding affinity values
M Rayka, M Mirzaei… - Molecular Informatics, 2024 - Wiley Online Library
When designing a machine learning‐based scoring function, we access a limited number of
protein‐ligand complexes with experimentally determined binding affinity values …
protein‐ligand complexes with experimentally determined binding affinity values …
Specifics of metabolite-protein interactions and their computational analysis and prediction
D Walther - Cell-Wide Identification of Metabolite-Protein …, 2022 - Springer
Computational approaches to the characterization and prediction of compound-protein
interactions have a long research history and are well established, driven primarily by the …
interactions have a long research history and are well established, driven primarily by the …
[HTML][HTML] AI-based prediction of protein–ligand binding affinity and discovery of potential natural product inhibitors against ERK2
R Yang, L Zhang, F Bu, F Sun, B Cheng - BMC chemistry, 2024 - Springer
Determination of protein–ligand binding affinity (PLA) is a key technological tool in hit
discovery and lead optimization, which is critical to the drug development process. PLA can …
discovery and lead optimization, which is critical to the drug development process. PLA can …
[HTML][HTML] Modeling DTA by Combining Multiple-Instance Learning with a Private-Public Mechanism
The prediction of the strengths of drug–target interactions, also called drug–target binding
affinities (DTA), plays a fundamental role in facilitating drug discovery, where the goal is to …
affinities (DTA), plays a fundamental role in facilitating drug discovery, where the goal is to …
Drug-Target Binding Affinity Prediction in a Continuous Latent Space Using Variational Autoencoders
L Zhao, Y Zhu, N Wen, C Wang… - … /ACM Transactions on …, 2024 - ieeexplore.ieee.org
Accurate prediction of Drug-Target binding Affinity (DTA) is a daunting yet pivotal task in the
sphere of drug discovery. Over the years, a plethora of deep learning-based DTA models …
sphere of drug discovery. Over the years, a plethora of deep learning-based DTA models …
DPLA: prediction of protein-ligand binding affinity by integrating multi-level information
In the drug discovery process and repurposing of existing drugs, accurately identifying
ligands with high binding affinity to proteins is a very critical step. However, it sinks a lot of …
ligands with high binding affinity to proteins is a very critical step. However, it sinks a lot of …
HSGCL-DTA: Hybrid-scale Graph Contrastive Learning based Drug-Target Binding Affinity Prediction
H Ye, Y Song, B Wang, L Wu, S He… - 2023 IEEE 35th …, 2023 - ieeexplore.ieee.org
Drug-target binding affinity (DTA) is a critical criterion for drug screening. Accurate affinity
prediction will significantly cut the cost of new drug development and accelerate the drug …
prediction will significantly cut the cost of new drug development and accelerate the drug …
PfgPDI: Pocket feature-enabled graph neural network for protein-drug interaction prediction.
Y Zhang, C Zhou - Journal of Bioinformatics and Computational …, 2024 - europepmc.org
Biomolecular interaction recognition between ligands and proteins is an essential task,
which largely enhances the safety and efficacy in drug discovery and development stage …
which largely enhances the safety and efficacy in drug discovery and development stage …
Predicting Protein-Ligand Binding Affinity with Multi-Scale Structural Features
H Wang, J Zhao, S Wang, Z He… - … on Bioinformatics and …, 2023 - ieeexplore.ieee.org
Predicting protein-ligand binding affinity is important in areas such as drug discovery, gene
regulation and signal transduction. The DTA (Drug-Target Affinity) method based on protein …
regulation and signal transduction. The DTA (Drug-Target Affinity) method based on protein …