An epigenetic role of mitochondria in cancer

Y Liu, C Chen, X Wang, Y Sun, J Zhang, J Chen, Y Shi - Cells, 2022 - mdpi.com
Mitochondria are not only the main energy supplier but are also the cell metabolic center
regulating multiple key metaborates that play pivotal roles in epigenetics regulation. These …

Induced pluripotent stem cells and their use in human models of disease and development

P Karagiannis, K Takahashi, M Saito… - Physiological …, 2019 - journals.physiology.org
The discovery of somatic cell nuclear transfer proved that somatic cells can carry the same
genetic code as the zygote, and that activating parts of this code are sufficient to reprogram …

[HTML][HTML] Machine learning identifies stemness features associated with oncogenic dedifferentiation

TM Malta, A Sokolov, AJ Gentles, T Burzykowski… - Cell, 2018 - cell.com
Cancer progression involves the gradual loss of a differentiated phenotype and acquisition
of progenitor and stem-cell-like features. Here, we provide novel stemness indices for …

DNA methylation age of human tissues and cell types

S Horvath - Genome biology, 2013 - Springer
Background It is not yet known whether DNA methylation levels can be used to accurately
predict age across a broad spectrum of human tissues and cell types, nor whether the …

A pan-tissue DNA methylation atlas enables in silico decomposition of human tissue methylomes at cell-type resolution

T Zhu, J Liu, S Beck, S Pan, D Capper, M Lechner… - Nature …, 2022 - nature.com
Bulk-tissue DNA methylomes represent an average over many different cell types,
hampering our understanding of cell-type-specific contributions to disease development. As …

Reproducibility and staging of 3D human retinal organoids across multiple pluripotent stem cell lines

EE Capowski, K Samimi, SJ Mayerl… - …, 2019 - journals.biologists.com
Numerous protocols have been described for producing neural retina from human
pluripotent stem cells (hPSCs), many of which are based on the culture of 3D organoids …

A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies

AE Teschendorff, CE Breeze, SC Zheng, S Beck - BMC bioinformatics, 2017 - Springer
Background Intra-sample cellular heterogeneity presents numerous challenges to the
identification of biomarkers in large Epigenome-Wide Association Studies (EWAS). While a …

Charting a dynamic DNA methylation landscape of the human genome

MJ Ziller, H Gu, F Müller, J Donaghey, LTY Tsai… - Nature, 2013 - nature.com
DNA methylation is a defining feature of mammalian cellular identity and is essential for
normal development,. Most cell types, except germ cells and pre-implantation embryos …

[HTML][HTML] Human embryonic stem cells derived by somatic cell nuclear transfer

M Tachibana, P Amato, M Sparman, NM Gutierrez… - Cell, 2013 - cell.com
Reprogramming somatic cells into pluripotent embryonic stem cells (ESCs) by somatic cell
nuclear transfer (SCNT) has been envisioned as an approach for generating patient …

Common genetic variation drives molecular heterogeneity in human iPSCs

H Kilpinen, A Goncalves, A Leha, V Afzal, K Alasoo… - Nature, 2017 - nature.com
Technology utilizing human induced pluripotent stem cells (iPS cells) has enormous
potential to provide improved cellular models of human disease. However, variable genetic …