RNA-binding proteins control gene expression and cell fate in the immune system

M Turner, MD Díaz-Muñoz - Nature immunology, 2018 - nature.com
RNA-binding proteins (RBPs) are essential for the development and function of the immune
system. They interact dynamically with RNA to control its biogenesis and turnover by …

Impacts and mechanisms of alternative mRNA splicing in cancer metabolism, immune response, and therapeutics

Q Peng, Y Zhou, L Oyang, N Wu, Y Tang, M Su, X Luo… - Molecular Therapy, 2022 - cell.com
Alternative pre-mRNA splicing (AS) provides the potential to produce diversity at RNA and
protein levels. Disruptions in the regulation of pre-mRNA splicing can lead to diseases. With …

IL-17D-induced inhibition of DDX5 expression in keratinocytes amplifies IL-36R-mediated skin inflammation

X Ni, Y Xu, W Wang, B Kong, J Ouyang, J Chen… - Nature …, 2022 - nature.com
Aberrant RNA splicing in keratinocytes drives inflammatory skin disorders. In the present
study, we found that the RNA helicase DDX5 was downregulated in keratinocytes from the …

Perspective in alternative splicing coupled to nonsense-mediated mRNA decay

JF García-Moreno, L Romão - International Journal of Molecular Sciences, 2020 - mdpi.com
Alternative splicing (AS) of precursor mRNA (pre-mRNA) is a cellular post-transcriptional
process that generates protein isoform diversity. Nonsense-mediated RNA decay (NMD) is …

Sierra: discovery of differential transcript usage from polyA-captured single-cell RNA-seq data

R Patrick, DT Humphreys, V Janbandhu, A Oshlack… - Genome biology, 2020 - Springer
High-throughput single-cell RNA-seq (scRNA-seq) is a powerful tool for studying gene
expression in single cells. Most current scRNA-seq bioinformatics tools focus on analysing …

Chemical induction of splice-neoantigens attenuates tumor growth in a preclinical model of colorectal cancer

S Matsushima, M Ajiro, K Iida, K Chamoto… - Science Translational …, 2022 - science.org
Neoantigen production is a determinant of cancer immunotherapy. However, the expansion
of neoantigen abundance for cancer therapeutics is technically challenging. Here, we report …

Alternative splicing in cancer and immune cells

A Bernard, R Boidot, F Végran - Cancers, 2022 - mdpi.com
Simple Summary Alternative splicing is one of the most fabulous and important mechanism
in the cell. Alternative splicing is capable of generating many proteins from a single gene …

Single-cell transcriptomics in cancer immunobiology: the future of precision oncology

F Valdes-Mora, K Handler, AMK Law… - Frontiers in …, 2018 - frontiersin.org
Cancer is a heterogeneous and complex disease. Tumors are formed by cancer cells and a
myriad of non-cancerous cell types that together with the extracellular matrix form the tumor …

Disease Activity-Associated Alteration of mRNA m5 C Methylation in CD4+ T Cells of Systemic Lupus Erythematosus

G Guo, H Wang, X Shi, L Ye, K Yan, Z Chen… - Frontiers in cell and …, 2020 - frontiersin.org
Epigenetic processes including RNA methylation, post-translational modifications, and non-
coding RNA expression have been associated with the heritable risks of systemic lupus …

Systematic analysis of alternative exon-dependent interactome remodeling reveals multitasking functions of gene regulatory factors

JF Roth, U Braunschweig, M Wu, JD Li, ZY Lin… - Molecular Cell, 2023 - cell.com
Alternative splicing significantly expands biological complexity, particularly in the vertebrate
nervous system. Increasing evidence indicates that developmental and tissue-dependent …