[HTML][HTML] Use of multiple 'omics techniques to accelerate the breeding of abiotic stress tolerant crops

MC Derbyshire, J Batley, D Edwards - Current Plant Biology, 2022 - Elsevier
Crop production can be severely limited by adverse environmental conditions such as
drought, extreme heat, and frost. As climate change intensifies, weather patterns are …

Understanding Host–Pathogen Interactions in Brassica napus in the Omics Era

TX Neik, J Amas, M Barbetti, D Edwards, J Batley - Plants, 2020 - mdpi.com
Brassica napus (canola/oilseed rape/rapeseed) is an economically important crop, mostly
found in temperate and sub-tropical regions, that is cultivated widely for its edible oil. Major …

Factors affecting the accuracy of genomic selection for agricultural economic traits in maize, cattle, and pig populations

H Zhang, L Yin, M Wang, X Yuan, X Liu - Frontiers in genetics, 2019 - frontiersin.org
Genomic Selection (GS) has been proved to be a powerful tool for estimating genetic values
in plant and livestock breeding. Newly developed sequencing technologies have …

Validation of genotyping by sequencing using transcriptomics for diversity and application of genomic selection in tetraploid potato

BM Caruana, LW Pembleton, F Constable… - Frontiers in plant …, 2019 - frontiersin.org
Potato is an important food crop due to its increasing consumption, and as a result, there is
demand for varieties with improved production. However, the current status of breeding for …

Multi-omics-based prediction of hybrid performance in canola

D Knoch, CR Werner, RC Meyer, D Riewe… - Theoretical and Applied …, 2021 - Springer
Key message Complementing or replacing genetic markers with transcriptomic data and use
of reproducing kernel Hilbert space regression based on Gaussian kernels increases hybrid …

Temporal dynamic methods for bulk RNA-Seq time series data

VKS Oh, RW Li - Genes, 2021 - mdpi.com
Dynamic studies in time course experimental designs and clinical approaches have been
widely used by the biomedical community. These applications are particularly relevant in …

Application of genomics approaches for the improvement in ascochyta blight resistance in chickpea

S Sudheesh, HV Kahrood, S Braich, N Dron, K Hobson… - Agronomy, 2021 - mdpi.com
Advancements in high-throughput genotyping and sequencing technologies are enabling
the development of a vast range of genomic tools and resources for a new revolution in plant …

Role of the genomics–phenomics–agronomy paradigm in plant breeding

CJ Chen, J Rutkoski, JC Schnable… - Plant Breeding …, 2022 - Wiley Online Library
Plant breeding primarily focuses on improving agronomy traits, eg yield, quality, host plant
resistance to pathogens and pests, and abiotic stress tolerance; however, the methods for …

Genomic prediction of preliminary yield trials in chickpea: Effect of functional annotation of SNPs and environment

Y Li, P Ruperao, J Batley, D Edwards… - The Plant …, 2022 - Wiley Online Library
Achieving yield potential in chickpea (Cicer arietinum L.) is limited by many constraints that
include biotic and abiotic stresses. Combining next‐generation sequencing technology with …

Application of genomics to understand salt tolerance in lentil

R Dissanayake, NOI Cogan, KF Smith, S Kaur - Genes, 2021 - mdpi.com
Soil salinity is a major abiotic stress, limiting lentil productivity worldwide. Understanding the
genetic basis of salt tolerance is vital to develop tolerant varieties. A diversity panel …