De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
We report de novo genome assemblies, transcriptomes, annotations, and methylomes for
the 26 inbreds that serve as the founders for the maize nested association mapping …
the 26 inbreds that serve as the founders for the maize nested association mapping …
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for …
Advances in genome sequencing and assembly technologies are generating many high-
quality genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as …
quality genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as …
Study of tofacitinib in refractory dermatomyositis: an open‐label pilot study of ten patients
Objective This open‐label 12‐week study was conducted to evaluate the efficacy and safety
of tofacitinib, a JAK inhibitor, in treatment‐refractory active dermatomyositis (DM). Methods …
of tofacitinib, a JAK inhibitor, in treatment‐refractory active dermatomyositis (DM). Methods …
Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution
We present reference-quality genome assembly and annotation for the stout camphor tree
(Cinnamomum kanehirae (Laurales, Lauraceae)), the first sequenced member of the …
(Cinnamomum kanehirae (Laurales, Lauraceae)), the first sequenced member of the …
[HTML][HTML] Non-coding natural antisense transcripts: Analysis and application
JC Krappinger, L Bonstingl, K Pansy, K Sallinger… - Journal of …, 2021 - Elsevier
Non-coding natural antisense transcripts (ncNATs) are regulatory RNA sequences that are
transcribed in the opposite direction to protein-coding or non-coding transcripts. These …
transcribed in the opposite direction to protein-coding or non-coding transcripts. These …
Gapless assembly of maize chromosomes using long-read technologies
Creating gapless telomere-to-telomere assemblies of complex genomes is one of the
ultimate challenges in genomics. We use two independent assemblies and an optical map …
ultimate challenges in genomics. We use two independent assemblies and an optical map …
[PDF][PDF] Leveraging multiple transcriptome assembly methods for improved gene structure annotation
Background The performance of RNA sequencing (RNA-seq) aligners and assemblers
varies greatly across different organisms and experiments, and often the optimal approach is …
varies greatly across different organisms and experiments, and often the optimal approach is …
ZCCHC8, the nuclear exosome targeting component, is mutated in familial pulmonary fibrosis and is required for telomerase RNA maturation
DL Gable, V Gaysinskaya, CC Atik… - Genes & …, 2019 - genesdev.cshlp.org
Short telomere syndromes manifest as familial idiopathic pulmonary fibrosis; they are the
most common premature aging disorders. We used genome-wide linkage to identify …
most common premature aging disorders. We used genome-wide linkage to identify …
[HTML][HTML] Long noncoding RNA study: Genome-wide approaches
Long noncoding RNAs (lncRNAs) have been confirmed to play a crucial role in various
biological processes across several species. Though many efforts have been devoted to the …
biological processes across several species. Though many efforts have been devoted to the …
Single-nucleus RNA-seq reveals that MBD5, MBD6, and SILENZIO maintain silencing in the vegetative cell of developing pollen
Silencing of transposable elements (TEs) drives the evolution of numerous redundant
mechanisms of transcriptional regulation. Arabidopsis MBD5, MBD6, and SILENZIO act as …
mechanisms of transcriptional regulation. Arabidopsis MBD5, MBD6, and SILENZIO act as …