SARS-CoV-2 3CLpro mutations selected in a VSV-based system confer resistance to nirmatrelvir, ensitrelvir, and GC376

E Heilmann, F Costacurta, SA Moghadasi… - Science translational …, 2022 - science.org
Protease inhibitors are among the most powerful antiviral drugs. Nirmatrelvir is the first
protease inhibitor specifically developed against the SARS-CoV-2 protease 3CLpro that has …

Antibody-mediated neutralization of SARS-CoV-2

H Gruell, K Vanshylla, T Weber, CO Barnes, C Kreer… - Immunity, 2022 - cell.com
Neutralizing antibodies can block infection, clear pathogens, and are essential to provide
long-term immunity. Since the onset of the pandemic, SARS-CoV-2 neutralizing antibodies …

[PDF][PDF] Comparative transmissibility of SARS-CoV-2 variants delta and alpha in New England, USA

R Earnest, R Uddin, N Matluk, N Renzette… - Cell Reports …, 2022 - cell.com
Summary The SARS-CoV-2 Delta variant rose to dominance in mid-2021, likely propelled by
an estimated 40%–80% increased transmissibility over Alpha. To investigate if this …

[PDF][PDF] A pseudovirus system enables deep mutational scanning of the full SARS-CoV-2 spike

B Dadonaite, KHD Crawford, CE Radford, AG Farrell… - Cell, 2023 - cell.com
A major challenge in understanding SARS-CoV-2 evolution is interpreting the antigenic and
functional effects of emerging mutations in the viral spike protein. Here, we describe a deep …

Compensatory epistasis maintains ACE2 affinity in SARS-CoV-2 Omicron BA. 1

A Moulana, T Dupic, AM Phillips, J Chang… - Nature …, 2022 - nature.com
The Omicron BA. 1 variant emerged in late 2021 and quickly spread across the world.
Compared to the earlier SARS-CoV-2 variants, BA. 1 has many mutations, some of which …

[PDF][PDF] SARS-CoV-2 Omicron sublineages exhibit distinct antibody escape patterns

H Gruell, K Vanshylla, M Korenkov, P Tober-Lau… - Cell Host & Microbe, 2022 - cell.com
SARS-CoV-2 neutralizing antibodies play a critical role in COVID-19 prevention and
treatment but are challenged by viral evolution and the emergence of novel escape variants …

ggmsa: a visual exploration tool for multiple sequence alignment and associated data

L Zhou, T Feng, S Xu, F Gao, TT Lam… - Briefings in …, 2022 - academic.oup.com
The identification of the conserved and variable regions in the multiple sequence alignment
(MSA) is critical to accelerating the process of understanding the function of genes. MSA …

[PDF][PDF] Virological characteristics of the SARS-CoV-2 BA. 2.86 variant

T Tamura, K Mizuma, H Nasser, S Deguchi… - Cell Host & Microbe, 2024 - cell.com
In late 2023, several SARS-CoV-2 XBB descendants, notably EG. 5.1, were predominant
worldwide. However, a distinct SARS-CoV-2 lineage, the BA. 2.86 variant, also emerged …

Omicron-specific mRNA vaccination alone and as a heterologous booster against SARS-CoV-2

Z Fang, L Peng, R Filler, K Suzuki, A McNamara… - Nature …, 2022 - nature.com
The Omicron variant of SARS-CoV-2 recently swept the globe and showed high level of
immune evasion. Here, we generate an Omicron-specific lipid nanoparticle (LNP) mRNA …

Mutations in SARS-CoV-2 structural proteins: A global analysis

M Abavisani, K Rahimian, B Mahdavi, S Tokhanbigli… - Virology Journal, 2022 - Springer
Background Emergence of new variants mainly variants of concerns (VOC) is caused by
mutations in main structural proteins of severe acute respiratory syndrome coronavirus 2 …