SARS-CoV-2 3CLpro mutations selected in a VSV-based system confer resistance to nirmatrelvir, ensitrelvir, and GC376
E Heilmann, F Costacurta, SA Moghadasi… - Science translational …, 2022 - science.org
Protease inhibitors are among the most powerful antiviral drugs. Nirmatrelvir is the first
protease inhibitor specifically developed against the SARS-CoV-2 protease 3CLpro that has …
protease inhibitor specifically developed against the SARS-CoV-2 protease 3CLpro that has …
Antibody-mediated neutralization of SARS-CoV-2
Neutralizing antibodies can block infection, clear pathogens, and are essential to provide
long-term immunity. Since the onset of the pandemic, SARS-CoV-2 neutralizing antibodies …
long-term immunity. Since the onset of the pandemic, SARS-CoV-2 neutralizing antibodies …
[PDF][PDF] Comparative transmissibility of SARS-CoV-2 variants delta and alpha in New England, USA
R Earnest, R Uddin, N Matluk, N Renzette… - Cell Reports …, 2022 - cell.com
Summary The SARS-CoV-2 Delta variant rose to dominance in mid-2021, likely propelled by
an estimated 40%–80% increased transmissibility over Alpha. To investigate if this …
an estimated 40%–80% increased transmissibility over Alpha. To investigate if this …
[PDF][PDF] A pseudovirus system enables deep mutational scanning of the full SARS-CoV-2 spike
B Dadonaite, KHD Crawford, CE Radford, AG Farrell… - Cell, 2023 - cell.com
A major challenge in understanding SARS-CoV-2 evolution is interpreting the antigenic and
functional effects of emerging mutations in the viral spike protein. Here, we describe a deep …
functional effects of emerging mutations in the viral spike protein. Here, we describe a deep …
Compensatory epistasis maintains ACE2 affinity in SARS-CoV-2 Omicron BA. 1
The Omicron BA. 1 variant emerged in late 2021 and quickly spread across the world.
Compared to the earlier SARS-CoV-2 variants, BA. 1 has many mutations, some of which …
Compared to the earlier SARS-CoV-2 variants, BA. 1 has many mutations, some of which …
[PDF][PDF] SARS-CoV-2 Omicron sublineages exhibit distinct antibody escape patterns
H Gruell, K Vanshylla, M Korenkov, P Tober-Lau… - Cell Host & Microbe, 2022 - cell.com
SARS-CoV-2 neutralizing antibodies play a critical role in COVID-19 prevention and
treatment but are challenged by viral evolution and the emergence of novel escape variants …
treatment but are challenged by viral evolution and the emergence of novel escape variants …
ggmsa: a visual exploration tool for multiple sequence alignment and associated data
The identification of the conserved and variable regions in the multiple sequence alignment
(MSA) is critical to accelerating the process of understanding the function of genes. MSA …
(MSA) is critical to accelerating the process of understanding the function of genes. MSA …
[PDF][PDF] Virological characteristics of the SARS-CoV-2 BA. 2.86 variant
In late 2023, several SARS-CoV-2 XBB descendants, notably EG. 5.1, were predominant
worldwide. However, a distinct SARS-CoV-2 lineage, the BA. 2.86 variant, also emerged …
worldwide. However, a distinct SARS-CoV-2 lineage, the BA. 2.86 variant, also emerged …
Omicron-specific mRNA vaccination alone and as a heterologous booster against SARS-CoV-2
The Omicron variant of SARS-CoV-2 recently swept the globe and showed high level of
immune evasion. Here, we generate an Omicron-specific lipid nanoparticle (LNP) mRNA …
immune evasion. Here, we generate an Omicron-specific lipid nanoparticle (LNP) mRNA …
Mutations in SARS-CoV-2 structural proteins: A global analysis
M Abavisani, K Rahimian, B Mahdavi, S Tokhanbigli… - Virology Journal, 2022 - Springer
Background Emergence of new variants mainly variants of concerns (VOC) is caused by
mutations in main structural proteins of severe acute respiratory syndrome coronavirus 2 …
mutations in main structural proteins of severe acute respiratory syndrome coronavirus 2 …