CovInter: interaction data between coronavirus RNAs and host proteins

K Amahong, W Zhang, Y Zhou, S Zhang… - Nucleic Acids …, 2023 - academic.oup.com
Coronavirus has brought about three massive outbreaks in the past two decades. Each step
of its life cycle invariably depends on the interactions among virus and host molecules. The …

Never ending story? Evolution of SARS-CoV-2 monitored through Gibbs energies of biosynthesis and antigen-receptor binding of Omicron BQ. 1, BQ. 1.1, XBB and …

M Popovic - Microbial risk analysis, 2023 - Elsevier
RNA viruses exhibit a great tendency to mutate. Mutations occur in the parts of the genome
that encode the spike glycoprotein and less often in the rest of the genome. This is why …

Predicting antiviral resistance mutations in SARS-CoV-2 main protease with computational and experimental screening

VM Sasi, S Ullrich, J Ton, SE Fry, J Johansen-Leete… - Biochemistry, 2022 - ACS Publications
The main protease (Mpro) of SARS-CoV-2 is essential for viral replication and has been the
focus of many drug discovery efforts since the start of the COVID-19 pandemic. Nirmatrelvir …

[HTML][HTML] COVID-19 annual update: A narrative review

M Biancolella, VL Colona, L Luzzatto, JL Watt… - Human Genomics, 2023 - Springer
Three and a half years after the pandemic outbreak, now that WHO has formally declared
that the emergency is over, COVID-19 is still a significant global issue. Here, we focus on …

[HTML][HTML] An exploratory study of tweets about the SARS-CoV-2 Omicron variant: Insights from sentiment analysis, language interpretation, source tracking, type …

N Thakur, CY Han - COVID, 2022 - mdpi.com
This paper presents the findings of an exploratory study on the continuously generating Big
Data on Twitter related to the sharing of information, news, views, opinions, ideas …

[HTML][HTML] Interaction between host G3BP and viral nucleocapsid protein regulates SARS-CoV-2 replication and pathogenicity

Z Yang, BA Johnson, VA Meliopoulos, X Ju, P Zhang… - Cell reports, 2024 - cell.com
Summary G3BP1/2 are paralogous proteins that promote stress granule formation in
response to cellular stresses, including viral infection. The nucleocapsid (N) protein of …

Genomic epidemiology of the first two waves of SARS-CoV-2 in Canada

A McLaughlin, V Montoya, RL Miller, GJ Mordecai… - Elife, 2022 - elifesciences.org
Tracking the emergence and spread of SARS-CoV-2 lineages using phylogenetics has
proven critical to inform the timing and stringency of COVID-19 public health interventions …

The SARS-CoV-2 Hydra, a tiny monster from the 21st century: Thermodynamics of the BA. 5.2 and BF. 7 variants

M Popovic - Microbial Risk Analysis, 2023 - Elsevier
SARS-CoV-2 resembles the ancient mythical creature Hydra. Just like with the Hydra, when
one head is cut, it is followed by appearance of two more heads, suppression of one SARS …

Ghosts of the past: Elemental composition, biosynthesis reactions and thermodynamic properties of Zeta P. 2, Eta B. 1.525, Theta P. 3, Kappa B. 1.617. 1, Iota B. 1.526 …

M Popovic, MP Pavlović, M Pavlović - Microbial risk analysis, 2023 - Elsevier
From the perspectives of molecular biology, genetics and biothermodynamics, SARS-CoV-2
is the among the best characterized viruses. Research on SARS-CoV-2 has shed a new …

Epidemic history and evolution of an emerging threat of international concern, the severe acute respiratory syndrome coronavirus 2

M Giovanetti, F Branda, E Cella… - Journal of Medical …, 2023 - Wiley Online Library
This comprehensive review focuses on the severe acute respiratory syndrome coronavirus 2
(SARS‐CoV‐2) and its impact as the cause of the COVID‐19 pandemic. Its objective is to …