Observation of long-range tertiary interactions during ligand binding by the TPP riboswitch aptamer

VK Duesterberg, IT Fischer-Hwang, CF Perez… - Elife, 2015 - elifesciences.org
The thiamine pyrophosphate (TPP) riboswitch is a cis-regulatory element in mRNA that
modifies gene expression in response to TPP concentration. Its specificity is dependent …

Assembly mechanism and cryoEM structure of RecA recombination nucleofilaments from Streptococcus pneumoniae

M Hertzog, TN Perry, P Dupaigne, S Serres… - Nucleic acids …, 2023 - academic.oup.com
RecA-mediated homologous recombination (HR) is a key mechanism for genome
maintenance and plasticity in bacteria. It proceeds through RecA assembly into a dynamic …

Visualizing protein–DNA interactions at the single-molecule level

J Hilario, SC Kowalczykowski - Current opinion in chemical biology, 2010 - Elsevier
Recent advancements in single-molecule methods have allowed researchers to directly
observe proteins acting on their DNA targets in real-time. Single-molecule imaging of protein …

Modular magnetic tweezers for single-molecule characterizations of helicases

FE Kemmerich, K Kasaciunaite, R Seidel - Methods, 2016 - Elsevier
Magnetic tweezers provide a versatile toolkit supporting the mechanistic investigation of
helicases. In the present article, we show that custom magnetic tweezers setups are …

Helicase Mechanisms During Homologous Recombination in Saccharomyces cerevisiae

JB Crickard, EC Greene - Annual review of biophysics, 2019 - annualreviews.org
Helicases are enzymes that move, manage, and manipulate nucleic acids. They can be
subdivided into six super families and are required for all aspects of nucleic acid …

Unravelling the structural plasticity of stretched DNA under torsional constraint

GA King, EJG Peterman, GJL Wuite - Nature communications, 2016 - nature.com
Regions of the genome are often held under torsional constraint. Nevertheless, the influence
of such constraint on DNA–protein interactions during genome metabolism is still poorly …

Single-molecule imaging of the oligomer formation of the nonhexameric Escherichia coli UvrD helicase

H Yokota, YA Chujo, Y Harada - Biophysical journal, 2013 - cell.com
Superfamily I helicases are nonhexameric helicases responsible for the unwinding of
nucleic acids. However, whether they unwind DNA in the form of monomers or oligomers …

Microfluidics: rapid diagnosis for breast cancer

S Panesar, S Neethirajan - Nano-micro letters, 2016 - Springer
Breast cancer affected 1.7 million people worldwide in 2012 and accounts for approximately
23.3% of all cancers diagnosed in women. The disease is characterized by a genetic …

Spontaneous self-segregation of Rad51 and Dmc1 DNA recombinases within mixed recombinase filaments

JB Crickard, K Kaniecki, YH Kwon, P Sung… - Journal of Biological …, 2018 - ASBMB
During meiosis, the two DNA recombinases Rad51 and Dmc1 form specialized presynaptic
filaments that are adapted for performing recombination between homologous …

Srs2 and Pif1 as model systems for understanding Sf1a and Sf1b helicase structure and function

A Meir, EC Greene - Genes, 2021 - mdpi.com
Helicases are enzymes that convert the chemical energy stored in ATP into mechanical
work, allowing them to move along and manipulate nucleic acids. The helicase superfamily …