Observation of long-range tertiary interactions during ligand binding by the TPP riboswitch aptamer
The thiamine pyrophosphate (TPP) riboswitch is a cis-regulatory element in mRNA that
modifies gene expression in response to TPP concentration. Its specificity is dependent …
modifies gene expression in response to TPP concentration. Its specificity is dependent …
Assembly mechanism and cryoEM structure of RecA recombination nucleofilaments from Streptococcus pneumoniae
M Hertzog, TN Perry, P Dupaigne, S Serres… - Nucleic acids …, 2023 - academic.oup.com
RecA-mediated homologous recombination (HR) is a key mechanism for genome
maintenance and plasticity in bacteria. It proceeds through RecA assembly into a dynamic …
maintenance and plasticity in bacteria. It proceeds through RecA assembly into a dynamic …
Visualizing protein–DNA interactions at the single-molecule level
J Hilario, SC Kowalczykowski - Current opinion in chemical biology, 2010 - Elsevier
Recent advancements in single-molecule methods have allowed researchers to directly
observe proteins acting on their DNA targets in real-time. Single-molecule imaging of protein …
observe proteins acting on their DNA targets in real-time. Single-molecule imaging of protein …
Modular magnetic tweezers for single-molecule characterizations of helicases
FE Kemmerich, K Kasaciunaite, R Seidel - Methods, 2016 - Elsevier
Magnetic tweezers provide a versatile toolkit supporting the mechanistic investigation of
helicases. In the present article, we show that custom magnetic tweezers setups are …
helicases. In the present article, we show that custom magnetic tweezers setups are …
Helicase Mechanisms During Homologous Recombination in Saccharomyces cerevisiae
JB Crickard, EC Greene - Annual review of biophysics, 2019 - annualreviews.org
Helicases are enzymes that move, manage, and manipulate nucleic acids. They can be
subdivided into six super families and are required for all aspects of nucleic acid …
subdivided into six super families and are required for all aspects of nucleic acid …
Unravelling the structural plasticity of stretched DNA under torsional constraint
Regions of the genome are often held under torsional constraint. Nevertheless, the influence
of such constraint on DNA–protein interactions during genome metabolism is still poorly …
of such constraint on DNA–protein interactions during genome metabolism is still poorly …
Single-molecule imaging of the oligomer formation of the nonhexameric Escherichia coli UvrD helicase
H Yokota, YA Chujo, Y Harada - Biophysical journal, 2013 - cell.com
Superfamily I helicases are nonhexameric helicases responsible for the unwinding of
nucleic acids. However, whether they unwind DNA in the form of monomers or oligomers …
nucleic acids. However, whether they unwind DNA in the form of monomers or oligomers …
Microfluidics: rapid diagnosis for breast cancer
S Panesar, S Neethirajan - Nano-micro letters, 2016 - Springer
Breast cancer affected 1.7 million people worldwide in 2012 and accounts for approximately
23.3% of all cancers diagnosed in women. The disease is characterized by a genetic …
23.3% of all cancers diagnosed in women. The disease is characterized by a genetic …
Spontaneous self-segregation of Rad51 and Dmc1 DNA recombinases within mixed recombinase filaments
During meiosis, the two DNA recombinases Rad51 and Dmc1 form specialized presynaptic
filaments that are adapted for performing recombination between homologous …
filaments that are adapted for performing recombination between homologous …
Srs2 and Pif1 as model systems for understanding Sf1a and Sf1b helicase structure and function
Helicases are enzymes that convert the chemical energy stored in ATP into mechanical
work, allowing them to move along and manipulate nucleic acids. The helicase superfamily …
work, allowing them to move along and manipulate nucleic acids. The helicase superfamily …