Phylotranscriptomic analyses of mycoheterotrophic monocots show a continuum of convergent evolutionary changes in expressed nuclear genes from three …
PR Timilsena, CF Barrett… - Genome biology and …, 2023 - academic.oup.com
Mycoheterotrophy is an alternative nutritional strategy whereby plants obtain sugars and
other nutrients from soil fungi. Mycoheterotrophy and associated loss of photosynthesis have …
other nutrients from soil fungi. Mycoheterotrophy and associated loss of photosynthesis have …
Towards identification of postharvest fruit quality transcriptomic markers in Malus domestica
Gene expression is highly impacted by the environment and can be reflective of past events
that affected developmental processes. It is therefore expected that gene expression can …
that affected developmental processes. It is therefore expected that gene expression can …
A combination of conserved and diverged responses underlies Theobroma cacao's defense response to Phytophthora palmivora
Background Plants have complex and dynamic immune systems that have evolved to resist
pathogens. Humans have worked to enhance these defenses in crops through breeding …
pathogens. Humans have worked to enhance these defenses in crops through breeding …
[PDF][PDF] Transcriptomic approach to uncover dynamic events in the development of mid-season sunburn in apple fruit
Apples grown in high heat, high light, and low humidity environments are at risk for sun
injury disorders like sunburn and associated crop losses. Understanding the physiological …
injury disorders like sunburn and associated crop losses. Understanding the physiological …
[HTML][HTML] Peach LAZY1 and DRO1 protein-protein interactions and co-expression with PRAF/RLD family support conserved gravity-related protein interactions across …
JM Waite, CA Hollender, JR Eilers… - Micropublication …, 2024 - ncbi.nlm.nih.gov
IGT/LAZY proteins play a central role in determining gravitropic set point angle and
orientation of lateral organs across plant species. Recent work in model systems has …
orientation of lateral organs across plant species. Recent work in model systems has …
kakapo: easy extraction and annotation of genes from raw RNA-seq reads
K Ramanauskas, B Igić - PeerJ, 2023 - peerj.com
Abstract kakapo (kākāpō) is a Python-based pipeline that allows users to extract and
assemble one or more specified genes or gene families. It flexibly uses original RNA-seq …
assemble one or more specified genes or gene families. It flexibly uses original RNA-seq …
Bioinformatics for gene identification and crop improvement in wheat
PK Gupta, J Chaudhary… - Bioinformatics for Plant …, 2024 - Wiley Online Library
In recent years, the availability of high‐throughput genome/transcriptome sequencing data
and sophisticated bioinformatics tools facilitated in silico identification of novel genes for …
and sophisticated bioinformatics tools facilitated in silico identification of novel genes for …
A Haplotype-resolved, Chromosome-scale Genome for Malus domestica Borkh. 'WA 38'
Genome sequencing for agriculturally important Rosaceous crops has made rapid progress
both in completeness and annotation quality. Whole genome sequence and annotation …
both in completeness and annotation quality. Whole genome sequence and annotation …
[PDF][PDF] A Phased, Chromosome-scale Genome for Malus domestica 'WA 38'
Genome sequencing for agriculturally important Rosaceous crops has made rapid progress
both in completeness and annotation quality. Whole genome sequence and annotation …
both in completeness and annotation quality. Whole genome sequence and annotation …