Identifiability analysis for stochastic differential equation models in systems biology
Mathematical models are routinely calibrated to experimental data, with goals ranging from
building predictive models to quantifying parameters that cannot be measured. Whether or …
building predictive models to quantifying parameters that cannot be measured. Whether or …
Integration of quantitative methods and mathematical approaches for the modeling of cancer cell proliferation dynamics
Physiological processes rely on the control of cell proliferation, and the dysregulation of
these processes underlies various pathological conditions, including cancer. Mathematical …
these processes underlies various pathological conditions, including cancer. Mathematical …
A stochastic mathematical model of 4D tumour spheroids with real-time fluorescent cell cycle labelling
In vitro tumour spheroids have been used to study avascular tumour growth and drug design
for over 50 years. Tumour spheroids exhibit heterogeneity within the growing population that …
for over 50 years. Tumour spheroids exhibit heterogeneity within the growing population that …
Quantification of spatial and phenotypic heterogeneity in an agent-based model of tumour-macrophage interactions
We introduce a new spatial statistic, the weighted pair correlation function (wPCF). The
wPCF extends the existing pair correlation function (PCF) and cross-PCF to describe spatial …
wPCF extends the existing pair correlation function (PCF) and cross-PCF to describe spatial …
Robust approximate Bayesian inference with synthetic likelihood
DT Frazier, C Drovandi - Journal of Computational and Graphical …, 2021 - Taylor & Francis
Bayesian synthetic likelihood (BSL) is now an established method for conducting
approximate Bayesian inference in models where, due to the intractability of the likelihood …
approximate Bayesian inference in models where, due to the intractability of the likelihood …
Modularized Bayesian analyses and cutting feedback in likelihood-free inference
There has been much recent interest in modifying Bayesian inference for misspecified
models so that it is useful for specific purposes. One popular modified Bayesian inference …
models so that it is useful for specific purposes. One popular modified Bayesian inference …
A Bayesian sequential learning framework to parameterise continuum models of melanoma invasion into human skin
We present a novel framework to parameterise a mathematical model of cell invasion that
describes how a population of melanoma cells invades into human skin tissue. Using simple …
describes how a population of melanoma cells invades into human skin tissue. Using simple …
Extended logistic growth model for heterogeneous populations
Cell proliferation is the most important cellular-level mechanism responsible for regulating
cell population dynamics in living tissues. Modern experimental procedures show that the …
cell population dynamics in living tissues. Modern experimental procedures show that the …
[HTML][HTML] Magnesium ions regulate mesenchymal stem cells population and osteogenic differentiation: A fuzzy agent-based modeling approach
J Nourisa, B Zeller-Plumhoff, H Helmholz… - Computational and …, 2021 - Elsevier
Mesenchymal stem cells (MSCs) are proliferative and multipotent cells that play a key role in
the bone regeneration process. Empirical data have repeatedly shown the bioregulatory …
the bone regeneration process. Empirical data have repeatedly shown the bioregulatory …
A practical guide to pseudo-marginal methods for computational inference in systems biology
For many stochastic models of interest in systems biology, such as those describing
biochemical reaction networks, exact quantification of parameter uncertainty through …
biochemical reaction networks, exact quantification of parameter uncertainty through …