Single-cell RNA sequencing in cardiovascular development, disease and medicine

DT Paik, S Cho, L Tian, HY Chang… - Nature Reviews Cardiology, 2020 - nature.com
Advances in single-cell RNA sequencing (scRNA-seq) technologies in the past 10 years
have had a transformative effect on biomedical research, enabling the profiling and analysis …

Active turnover of DNA methylation during cell fate decisions

A Parry, S Rulands, W Reik - Nature Reviews Genetics, 2021 - nature.com
DNA methylation is a key layer of epigenetic regulation. The deposition of methylation marks
relies on the catalytic activity of DNA methyltransferases (DNMTs), and their active removal …

[HTML][HTML] Epigenetic modifications in stress response genes associated with childhood trauma

S Jiang, L Postovit, A Cattaneo, EB Binder… - Frontiers in …, 2019 - frontiersin.org
Adverse childhood experiences (ACEs) may be referred to by other terms (eg, early life
adversity or stress and childhood trauma) and have a lifelong impact on mental and physical …

Single-cell epigenomics: Recording the past and predicting the future

G Kelsey, O Stegle, W Reik - Science, 2017 - science.org
Single-cell multi-omics has recently emerged as a powerful technology by which different
layers of genomic output—and hence cell identity and function—can be recorded …

[HTML][HTML] LifeTime and improving European healthcare through cell-based interceptive medicine

N Rajewsky, G Almouzni, SA Gorski, S Aerts, I Amit… - Nature, 2020 - nature.com
Here we describe the LifeTime Initiative, which aims to track, understand and target human
cells during the onset and progression of complex diseases, and to analyse their response …

Time-resolved single-cell RNA-seq using metabolic RNA labelling

F Erhard, AE Saliba, A Lusser, C Toussaint… - Nature Reviews …, 2022 - nature.com
Single-cell RNA genomics technologies are revolutionizing biomedical science by profiling
single cells with unprecedented resolution, providing fundamental insights into the role of …

Chromatin accessibility profiling methods

L Minnoye, GK Marinov, T Krausgruber, L Pan… - Nature Reviews …, 2021 - nature.com
Chromatin accessibility, or the physical access to chromatinized DNA, is a widely studied
characteristic of the eukaryotic genome. As active regulatory DNA elements are generally …

Integrative spatial analysis of cell morphologies and transcriptional states with MUSE

F Bao, Y Deng, S Wan, SQ Shen, B Wang, Q Dai… - Nature …, 2022 - nature.com
Spatial transcriptomics enables the simultaneous measurement of morphological features
and transcriptional profiles of the same cells or regions in tissues. Here we present multi …

ISSAAC-seq enables sensitive and flexible multimodal profiling of chromatin accessibility and gene expression in single cells

W Xu, W Yang, Y Zhang, Y Chen, N Hong, Q Zhang… - Nature …, 2022 - nature.com
Joint profiling of chromatin accessibility and gene expression from the same single cell
provides critical information about cell types in a tissue and cell states during a dynamic …

[HTML][HTML] Single cell cancer epigenetics

M Casado-Pelaez, A Bueno-Costa, M Esteller - Trends in Cancer, 2022 - cell.com
Bulk sequencing methodologies have allowed us to make great progress in cancer
research. Unfortunately, these techniques lack the resolution to fully unravel the epigenetic …