A guide to carrying out a phylogenomic target sequence capture project

T Andermann, MF Torres Jiménez… - Frontiers in …, 2020 - frontiersin.org
High-throughput DNA sequencing techniques enable time-and cost-effective sequencing of
large portions of the genome. Instead of sequencing and annotating whole genomes, many …

Progress in forensic bone DNA analysis: Lessons learned from ancient DNA

M Hofreiter, J Sneberger, M Pospisek… - Forensic Science …, 2021 - Elsevier
Research on ancient and forensic DNA is related in many ways, and the two fields must deal
with similar obstacles. Therefore, communication between these two communities has the …

Upper Palaeolithic genomes reveal deep roots of modern Eurasians

ER Jones, G Gonzalez-Fortes, S Connell… - Nature …, 2015 - nature.com
We extend the scope of European palaeogenomics by sequencing the genomes of Late
Upper Palaeolithic (13,300 years old, 1.4-fold coverage) and Mesolithic (9,700 years old …

[HTML][HTML] Optimal ancient DNA yields from the inner ear part of the human petrous bone

R Pinhasi, D Fernandes, K Sirak, M Novak, S Connell… - PloS one, 2015 - journals.plos.org
The invention and development of next or second generation sequencing methods has
resulted in a dramatic transformation of ancient DNA research and allowed shotgun …

Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA

S Sawyer, J Krause, K Guschanski, V Savolainen… - PloS one, 2012 - journals.plos.org
DNA that survives in museum specimens, bones and other tissues recovered by
archaeologists is invariably fragmented and chemically modified. The extent to which such …

The use of museum specimens with high-throughput DNA sequencers

AS Burrell, TR Disotell, CM Bergey - Journal of human evolution, 2015 - Elsevier
Natural history collections have long been used by morphologists, anatomists, and
taxonomists to probe the evolutionary process and describe biological diversity. These …

Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada

PD Heintzman, D Froese, JW Ives… - Proceedings of the …, 2016 - National Acad Sciences
The Ice Free Corridor has been invoked as a route for Pleistocene human and animal
dispersals between eastern Beringia and more southerly areas of North America. Despite …

Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification

KA Ziesemer, AE Mann, K Sankaranarayanan… - Scientific reports, 2015 - nature.com
To date, characterization of ancient oral (dental calculus) and gut (coprolite) microbiota has
been primarily accomplished through a metataxonomic approach involving targeted …

Evolution of mammalian diving capacity traced by myoglobin net surface charge

S Mirceta, AV Signore, JM Burns, AR Cossins… - Science, 2013 - science.org
Introduction Evolution of extended breath-hold endurance enables the exploitation of the
aquatic niche by numerous mammalian lineages and is accomplished by elevated body …

[HTML][HTML] Early Austronesians: into and out of Taiwan

AMS Ko, CY Chen, Q Fu, F Delfin, M Li, HL Chiu… - The American Journal of …, 2014 - cell.com
A Taiwan origin for the expansion of the Austronesian languages and their speakers is well
supported by linguistic and archaeological evidence. However, human genetic evidence is …