Synthetic biology of extremophiles: a new wave of biomanufacturing
JW Ye, YN Lin, XQ Yi, ZX Yu, X Liu, GQ Chen - Trends in Biotechnology, 2023 - cell.com
Microbial biomanufacturing, powered by the advances of synthetic biology, has attracted
growing interest for the production of diverse products. In contrast to conventional microbes …
growing interest for the production of diverse products. In contrast to conventional microbes …
Automated engineering of synthetic metabolic pathways for efficient biomanufacturing
I Otero-Muras, P Carbonell - Metabolic Engineering, 2021 - Elsevier
Metabolic engineering involves the engineering and optimization of processes from single-
cell to fermentation in order to increase production of valuable chemicals for health, food …
cell to fermentation in order to increase production of valuable chemicals for health, food …
Controlling gene expression with deep generative design of regulatory DNA
Abstract Design of de novo synthetic regulatory DNA is a promising avenue to control gene
expression in biotechnology and medicine. Using mutagenesis typically requires screening …
expression in biotechnology and medicine. Using mutagenesis typically requires screening …
High-throughput genetic engineering of nonmodel and undomesticated bacteria via iterative site-specific genome integration
Efficient genome engineering is critical to understand and use microbial functions. Despite
recent development of tools such as CRISPR-Cas gene editing, efficient integration of …
recent development of tools such as CRISPR-Cas gene editing, efficient integration of …
[HTML][HTML] Model-guided dynamic control of essential metabolic nodes boosts acetyl-coenzyme A–dependent bioproduction in rewired Pseudomonas putida
Pseudomonas putida is evolutionarily endowed with features relevant for bioproduction,
especially under harsh operating conditions. The rich metabolic versatility of this species …
especially under harsh operating conditions. The rich metabolic versatility of this species …
Characterization of antibiotic resistomes by reprogrammed bacteriophage-enabled functional metagenomics in clinical strains
G Apjok, M Számel, C Christodoulou, V Seregi… - Nature …, 2023 - nature.com
Functional metagenomics is a powerful experimental tool to identify antibiotic resistance
genes (ARGs) in the environment, but the range of suitable host bacterial species is limited …
genes (ARGs) in the environment, but the range of suitable host bacterial species is limited …
Phage satellites and their emerging applications in biotechnology
R Ibarra-Chavez, MF Hansen… - FEMS Microbiology …, 2021 - academic.oup.com
The arms race between (bacterio) phages and their hosts is a recognised hot spot for
genome evolution. Indeed, phages and their components have historically paved the way for …
genome evolution. Indeed, phages and their components have historically paved the way for …
Metagenomics harvested genus-specific single-stranded DNA-annealing proteins improve and expand recombineering in Pseudomonas species
E Asin-Garcia, L Garcia-Morales… - Nucleic acids …, 2023 - academic.oup.com
The widespread Pseudomonas genus comprises a collection of related species with
remarkable abilities to degrade plastics and polluted wastes and to produce a broad set of …
remarkable abilities to degrade plastics and polluted wastes and to produce a broad set of …
Smarter cures to combat COVID-19 and future pathogens: a review
H Dai, J Han, E Lichtfouse - Environmental Chemistry Letters, 2021 - Springer
Prevention is better than cure. A milestone of the anthropocene is the emergence of a series
of epidemics and pandemics often characterized by the transmission of a pathogen from …
of epidemics and pandemics often characterized by the transmission of a pathogen from …
The use of bacteriophages in biotechnology and recent insights into proteomics
AG Abril, M Carrera, V Notario, Á Sánchez-Pérez… - Antibiotics, 2022 - mdpi.com
Phages have certain features, such as their ability to form protein–protein interactions, that
make them good candidates for use in a variety of beneficial applications, such as in human …
make them good candidates for use in a variety of beneficial applications, such as in human …