Homoeologous exchanges, segmental allopolyploidy, and polyploid genome evolution

AS Mason, JF Wendel - Frontiers in Genetics, 2020 - frontiersin.org
Polyploidy is a major force in plant evolution and speciation. In newly formed allopolyploids,
pairing between related chromosomes from different subgenomes (homoeologous …

Genomics of evolutionary novelty in hybrids and polyploids

G Nieto Feliner, J Casacuberta, JF Wendel - Frontiers in genetics, 2020 - frontiersin.org
It has long been recognized that hybridization and polyploidy are prominent processes in
plant evolution. Although classically recognized as significant in speciation and adaptation …

Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: a genomic and epigenomic perspective

SK Deb, PP Edger, JC Pires, MR McKain - New Phytologist, 2023 - Wiley Online Library
Allopolyploids result from hybridization between different evolutionary lineages coupled with
genome doubling. Homoeologous chromosomes (chromosomes with common shared …

Myb10‐D confers PHS‐3D resistance to pre‐harvest sprouting by regulating NCED in ABA biosynthesis pathway of wheat

J Lang, Y Fu, Y Zhou, M Cheng, M Deng, M Li… - New …, 2021 - Wiley Online Library
Summary Pre‐harvest sprouting (PHS), the germination of grain before harvest, is a serious
problem resulting in wheat yield and quality losses. Here, we mapped the PHS resistance …

Connecting genome structural variation with complex traits in crop plants

I Gabur, HS Chawla, RJ Snowdon… - Theoretical and applied …, 2019 - Springer
Key message Structural genome variation is a major determinant of useful trait diversity. We
describe how genome analysis methods are enabling discovery of trait-associated structural …

The wheat AGL6‐like MADS‐box gene is a master regulator for floral organ identity and a target for spikelet meristem development manipulation

X Kong, F Wang, S Geng, J Guan, S Tao… - Plant Biotechnology …, 2022 - Wiley Online Library
Summary The AGAMOUS‐LIKE6 (AGL6)‐like genes are ancient MADS‐box genes and are
functionally studied in a few model plants. The knowledge of these genes in wheat remains …

Plant genome editing and the relevance of off-target changes

N Graham, GB Patil, DM Bubeck, RC Dobert… - Plant …, 2020 - academic.oup.com
Site-directed nucleases (SDNs) used for targeted genome editing are powerful new tools to
introduce precise genetic changes into plants. Like traditional approaches, such as …

Haplotype blocks for genomic prediction: a comparative evaluation in multiple crop datasets

SE Weber, M Frisch, RJ Snowdon… - Frontiers in Plant …, 2023 - frontiersin.org
In modern plant breeding, genomic selection is becoming the gold standard for selection of
superior genotypes. The basis for genomic prediction models is a set of phenotyped lines …

Genomic mosaicism due to homoeologous exchange generates extensive phenotypic diversity in nascent allopolyploids

Y Wu, F Lin, Y Zhou, J Wang, S Sun… - National Science …, 2021 - academic.oup.com
Allopolyploidy is an important process in plant speciation, yet newly formed allopolyploid
species typically suffer from extreme genetic bottlenecks. One escape from this impasse …

Meiosis in polyploids and implications for genetic mapping: a review

NR Soares, M Mollinari, GK Oliveira, GS Pereira… - Genes, 2021 - mdpi.com
Plant cytogenetic studies have provided essential knowledge on chromosome behavior
during meiosis, contributing to our understanding of this complex process. In this review, we …