Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

Genome sequencing reveals the genetic architecture of heterostyly and domestication history of common buckwheat

JA Fawcett, R Takeshima, S Kikuchi, E Yazaki… - Nature Plants, 2023 - nature.com
Common buckwheat, Fagopyrum esculentum, is an orphan crop domesticated in southwest
China that exhibits heterostylous self-incompatibility. Here we present chromosome-scale …

Disentangling sources of gene tree discordance in phylogenomic data sets: testing ancient hybridizations in Amaranthaceae sl

DF Morales-Briones, G Kadereit, DT Tefarikis… - Systematic …, 2021 - academic.oup.com
Gene tree discordance in large genomic data sets can be caused by evolutionary processes
such as incomplete lineage sorting and hybridization, as well as model violation, and errors …

[HTML][HTML] A plastid phylogenomic framework for the palm family (Arecaceae)

G Yao, YQ Zhang, C Barrett, B Xue, S Bellot, WJ Baker… - BMC biology, 2023 - Springer
Background Over the past decade, phylogenomics has greatly advanced our knowledge of
angiosperm evolution. However, phylogenomic studies of large angiosperm families with …

Chromosome-scale genome sequence of Suaeda glauca sheds light on salt stress tolerance in halophytes

Y Cheng, J Sun, M Jiang, Z Luo, Y Wang… - Horticulture …, 2023 - academic.oup.com
Soil salinity is a growing concern for global crop production and the sustainable
development of humanity. Therefore, it is crucial to comprehend salt tolerance mechanisms …

A phylogenomic analysis of Nepenthes (Nepenthaceae)

B Murphy, F Forest, T Barraclough, J Rosindell… - Molecular Phylogenetics …, 2020 - Elsevier
Nepenthaceae is one of the largest carnivorous plant families and features ecological and
morphological adaptations indicating an impressive adaptive radiation. However …

[HTML][HTML] Phylogenomic and evolutionary dynamics of inverted repeats across Angelica plastomes

M Wang, X Wang, J Sun, Y Wang, Y Ge, W Dong… - BMC plant biology, 2021 - Springer
Abstract Background Angelica L.(family Apiaceae) is an economically important genus
comprising ca. One hundred ten species. Angelica species are found on all continents of the …

More than a spiny morphology: plastome variation in the prickly pear cacti (Opuntieae)

M Köhler, M Reginato, JJ Jin, LC Majure - Annals of Botany, 2023 - academic.oup.com
Background Plastid genomes (plastomes) have long been recognized as highly conserved
in their overall structure, size, gene arrangement and content among land plants. However …

[HTML][HTML] The genome of the glasshouse plant noble rhubarb (Rheum nobile) provides a window into alpine adaptation

T Feng, B Pucker, T Kuang, B Song, Y Yang… - Communications …, 2023 - nature.com
Glasshouse plants are species that trap warmth via specialized morphology and physiology,
mimicking a human glasshouse. In the Himalayan alpine region, the highly specialized …

A high-quality Bougainvillea genome provides new insights into evolutionary history and pigment biosynthetic pathways in the Caryophyllales

L Lan, H Zhao, S Xu, S Kan, X Zhang, W Liu… - Horticulture …, 2023 - academic.oup.com
Bougainvillea is a perennial ornamental shrub that is highly regarded in ornamental
horticulture around the world. However, the absence of genome data limits our …