Codon optimality, bias and usage in translation and mRNA decay

G Hanson, J Coller - Nature reviews Molecular cell biology, 2018 - nature.com
The advent of ribosome profiling and other tools to probe mRNA translation has revealed
that codon bias—the uneven use of synonymous codons in the transcriptome—serves as a …

Regulation of mRNA translation and stability by microRNAs

MR Fabian, N Sonenberg… - Annual review of …, 2010 - annualreviews.org
MicroRNAs (miRNAs) are small noncoding RNAs that extensively regulate gene expression
in animals, plants, and protozoa. miRNAs function posttranscriptionally by usually base …

NAT10 drives cisplatin chemoresistance by enhancing ac4C-associated DNA repair in bladder cancer

R Xie, L Cheng, M Huang, L Huang, Z Chen, Q Zhang… - Cancer research, 2023 - AACR
Epitranscriptomic RNA modifications constitute a critical gene regulatory component that can
affect cancer progression. Among these, the RNA N4-acetylcytidine (ac4C) modification …

[PDF][PDF] The RNA-binding protein SYNCRIP is a component of the hepatocyte exosomal machinery controlling microRNA sorting

L Santangelo, G Giurato, C Cicchini, C Montaldo… - Cell reports, 2016 - cell.com
Despite clear evidence that exosomal microRNAs (miRNAs) are able to modulate the
cellular microenvironment and that exosomal RNA cargo selection is deregulated in …

[PDF][PDF] Loss of SYNCRIP unleashes APOBEC-driven mutagenesis, tumor heterogeneity, and AR-targeted therapy resistance in prostate cancer

X Li, Y Wang, S Deng, G Zhu, C Wang, NA Johnson… - Cancer cell, 2023 - cell.com
Tumor mutational burden and heterogeneity has been suggested to fuel resistance to many
targeted therapies. The cytosine deaminase APOBEC proteins have been implicated in the …

Dysregulation and restoration of translational homeostasis in fragile X syndrome

JD Richter, GJ Bassell, E Klann - Nature Reviews Neuroscience, 2015 - nature.com
Fragile X syndrome (FXS), the most-frequently inherited form of intellectual disability and the
most-prevalent single-gene cause of autism, results from a lack of fragile X mental …

Functional diversity of the hnRNPs: past, present and perspectives

SP Han, YH Tang, R Smith - Biochemical Journal, 2010 - portlandpress.com
The hnRNPs (heterogeneous nuclear ribonucleoproteins) are RNA-binding proteins with
important roles in multiple aspects of nucleic acid metabolism, including the packaging of …

Cellular IRES-mediated translation: the war of ITAFs in pathophysiological states

AA Komar, M Hatzoglou - Cell cycle, 2011 - Taylor & Francis
Translation of cellular mRNAs via initiation at Internal Ribosome Entry Sites (IRESs) has
received increased attention during recent years due to its emerging significance for many …

AU-rich elements and associated factors: are there unifying principles?

C Barreau, L Paillard, HB Osborne - Nucleic acids research, 2005 - academic.oup.com
The control of mRNA stability is an important process that allows cells to not only limit, but
also rapidly adjust, the expression of regulatory factors whose over expression may be …

Modification of antigen-encoding RNA increases stability, translational efficacy, and T-cell stimulatory capacity of dendritic cells

S Holtkamp, S Kreiter, A Selmi, P Simon, M Koslowski… - Blood, 2006 - ashpublications.org
Adoptive transfer of dendritic cells (DCs) transfected with in vitro–transcribed, RNA-
encoding, tumor-associated antigens has recently entered clinical testing as a promising …