[HTML][HTML] Implementing and testing the multispecies coalescent model: a valuable paradigm for phylogenomics
In recent articles published in Molecular Phylogenetics and Evolution, Mark Springer and
John Gatesy (S&G) present numerous criticisms of recent implementations and testing of the …
John Gatesy (S&G) present numerous criticisms of recent implementations and testing of the …
Multispecies coalescent: theory and applications in phylogenetics
Species tree estimation is a basic part of many biological research projects, ranging from
answering basic evolutionary questions (eg, how did a group of species adapt to their …
answering basic evolutionary questions (eg, how did a group of species adapt to their …
Contentious relationships in phylogenomic studies can be driven by a handful of genes
Phylogenomic studies have resolved countless branches of the tree of life, but remain
strongly contradictory on certain, contentious relationships. Here, we use a maximum …
strongly contradictory on certain, contentious relationships. Here, we use a maximum …
[图书][B] Modern phylogenetic comparative methods and their application in evolutionary biology: concepts and practice
LZ Garamszegi - 2014 - Springer
Many evolutionary biologists are concerned with the tremendous amount of diversity of
species, and their phenotypes, that we can currently observe in nature, and one of the most …
species, and their phenotypes, that we can currently observe in nature, and one of the most …
Prehistoric genomes reveal the genetic foundation and cost of horse domestication
The domestication of the horse∼ 5.5 kya and the emergence of mounted riding, chariotry,
and cavalry dramatically transformed human civilization. However, the genetics underlying …
and cavalry dramatically transformed human civilization. However, the genetics underlying …
Evaluating summary methods for multilocus species tree estimation in the presence of incomplete lineage sorting
Species tree estimation is complicated by processes, such as gene duplication and loss and
incomplete lineage sorting (ILS), that cause discordance between gene trees and the …
incomplete lineage sorting (ILS), that cause discordance between gene trees and the …
Maximum likelihood inference of reticulate evolutionary histories
Hybridization plays an important role in the evolution of certain groups of organisms,
adaptation to their environments, and diversification of their genomes. The evolutionary …
adaptation to their environments, and diversification of their genomes. The evolutionary …
[HTML][HTML] The evolutionary history of bears is characterized by gene flow across species
Bears are iconic mammals with a complex evolutionary history. Natural bear hybrids and
studies of few nuclear genes indicate that gene flow among bears may be more common …
studies of few nuclear genes indicate that gene flow among bears may be more common …
[HTML][HTML] A maximum pseudo-likelihood approach for phylogenetic networks
Y Yu, L Nakhleh - BMC genomics, 2015 - Springer
Background Several phylogenomic analyses have recently demonstrated the need to
account simultaneously for incomplete lineage sorting (ILS) and hybridization when inferring …
account simultaneously for incomplete lineage sorting (ILS) and hybridization when inferring …
The perfect storm: gene tree estimation error, incomplete lineage sorting, and ancient gene flow explain the most recalcitrant ancient angiosperm clade, Malpighiales
The genomic revolution offers renewed hope of resolving rapid radiations in the Tree of Life.
The development of the multispecies coalescent model and improved gene tree estimation …
The development of the multispecies coalescent model and improved gene tree estimation …