[HTML][HTML] Enhancing alphafold-multimer-based protein complex structure prediction with MULTICOM in CASP15
Abstract To enhance the AlphaFold-Multimer-based protein complex structure prediction, we
developed a quaternary structure prediction system (MULTICOM) to improve the input fed to …
developed a quaternary structure prediction system (MULTICOM) to improve the input fed to …
Review and Comparative Analysis of Methods and Advancements in Predicting Protein Complex Structure
N Zhao, T Wu, W Wang, L Zhang, X Gong - … Sciences: Computational Life …, 2024 - Springer
Protein complexes perform diverse biological functions, and obtaining their three-
dimensional structure is critical to understanding and grasping their functions. In many …
dimensional structure is critical to understanding and grasping their functions. In many …
Target recognition in tandem WW domains: complex structures for parallel and antiparallel ligand orientation in h-FBP21 tandem WW
MT Wenz, M Bertazzon, J Sticht, S Aleksic… - Journal of Chemical …, 2022 - ACS Publications
Protein–protein interactions often rely on specialized recognition domains, such as WW
domains, which bind to specific proline-rich sequences. The specificity of these protein …
domains, which bind to specific proline-rich sequences. The specificity of these protein …
[HTML][HTML] A dynamical view of protein-protein complexes: Studies by molecular dynamics simulations
Protein-protein interactions are at the basis of many protein functions, and the knowledge of
3D structures of protein-protein complexes provides structural, mechanical and dynamical …
3D structures of protein-protein complexes provides structural, mechanical and dynamical …
Refinement of AlphaFold-Multimer structures with single sequence input
T Oda - bioRxiv, 2022 - biorxiv.org
AlphaFold2, introduced by DeepMind in CASP14, demonstrated outstanding performance in
predicting protein monomer structures. It could model more than 90% of targets with high …
predicting protein monomer structures. It could model more than 90% of targets with high …
Computational Modeling of IN-CTD/TAR Complex to Elucidate Additional Strategies to Inhibit HIV-1 Replication
L Qiu, S Bhutoria, GV Kalpana, X Zou - Virus-Host Interactions: Methods …, 2022 - Springer
Abstract HIV-1 integrase (IN) is a key enzyme that is essential for mediating the insertion of
retroviral DNA into the host chromosome. IN also exhibits additional functions which are not …
retroviral DNA into the host chromosome. IN also exhibits additional functions which are not …
Exploration and structural modelling of protein interactions using evolutionary information
C Quignot - 2020 - theses.hal.science
Protein complexes are of fundamental importance in most biological processes and mainly
carry out their function in networks. The structure of their interface can give us crucial …
carry out their function in networks. The structure of their interface can give us crucial …