DensiTree 2: Seeing trees through the forest
RR Bouckaert, J Heled - BioRxiv, 2014 - biorxiv.org
Abstract Motivation Phylogenetic analysis like Bayesian MCMC or bootstrapping result in a
collection of trees. Trees are discrete objects and it is generally difficult to get a mental grip …
collection of trees. Trees are discrete objects and it is generally difficult to get a mental grip …
Multilocus Species Trees Show the Recent Adaptive Radiation of the Mimetic Heliconius Butterflies
KM Kozak, N Wahlberg, AFE Neild… - Systematic …, 2015 - academic.oup.com
Müllerian mimicry among Neotropical Heliconiini butterflies is an excellent example of
natural selection, associated with the diversification of a large continental-scale radiation …
natural selection, associated with the diversification of a large continental-scale radiation …
How many bootstrap replicates are necessary?
ND Pattengale, M Alipour… - … Molecular Biology: 13th …, 2009 - Springer
Phylogenetic Bootstrapping (BS) is a standard technique for inferring confidence values on
phylogenetic trees that is based on reconstructing many trees from minor variations of the …
phylogenetic trees that is based on reconstructing many trees from minor variations of the …
treespace: Statistical exploration of landscapes of phylogenetic trees
The increasing availability of large genomic data sets as well as the advent of Bayesian
phylogenetics facilitates the investigation of phylogenetic incongruence, which can result in …
phylogenetics facilitates the investigation of phylogenetic incongruence, which can result in …
New methods for detecting lineage-specific selection
So far, most methods for identifying sequences under selection based on comparative
sequence data have either assumed selectional pressures are the same across all branches …
sequence data have either assumed selectional pressures are the same across all branches …
[图书][B] Computational phylogenetics: an introduction to designing methods for phylogeny estimation
T Warnow - 2017 - books.google.com
A comprehensive account of both basic and advanced material in phylogeny estimation,
focusing on computational and statistical issues. No background in biology or computer …
focusing on computational and statistical issues. No background in biology or computer …
Phylogenetic analysis of Microlicieae (Melastomataceae), with emphasis on the re-circumscription of the large genus Microlicia
Microlicieae are a monophyletic tribe comprising seven genera: Chaetostoma, Lavoisiera,
Microlicia ss, Poteranthera, Rhynchanthera, Stenodon and Trembleya. Microlicia ss includes …
Microlicia ss, Poteranthera, Rhynchanthera, Stenodon and Trembleya. Microlicia ss includes …
A fast algorithm for computing geodesic distances in tree space
M Owen, JS Provan - IEEE/ACM Transactions on …, 2010 - ieeexplore.ieee.org
Comparing and computing distances between phylogenetic trees are important biological
problems, especially for models where edge lengths play an important role. The geodesic …
problems, especially for models where edge lengths play an important role. The geodesic …
A large-scale systematic framework of Chinese snakes based on a unified multilocus marker system
JN Li, D Liang, YY Wang, P Guo, S Huang… - Molecular phylogenetics …, 2020 - Elsevier
Snakes are one of the most diverse groups of terrestrial vertebrates, with approximately
3500 extant species. A robust phylogeny and taxonomy of snakes is crucial for us to know …
3500 extant species. A robust phylogeny and taxonomy of snakes is crucial for us to know …
A survey of multiple tree visualisation
This article summarises the current state of research into multiple tree visualisations. It
discusses the spectrum of current representation techniques used on single trees, pairs of …
discusses the spectrum of current representation techniques used on single trees, pairs of …