Beyond the exome: what's next in diagnostic testing for Mendelian conditions

MH Wojcik, CM Reuter, S Marwaha… - The American Journal of …, 2023 - cell.com
Despite advances in clinical genetic testing, including the introduction of exome sequencing
(ES), more than 50% of individuals with a suspected Mendelian condition lack a precise …

The omics era: a nexus of untapped potential for Mendelian chromatinopathies

AA Nava, VA Arboleda - Human Genetics, 2024 - Springer
The OMICs cascade describes the hierarchical flow of information through biological
systems. The epigenome sits at the apex of the cascade, thereby regulating the RNA and …

Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses

J Rodríguez-Ubreva, A Arutyunyan, MJ Bonder… - Nature …, 2022 - nature.com
Common variable immunodeficiency (CVID), the most prevalent symptomatic primary
immunodeficiency, displays impaired terminal B-cell differentiation and defective antibody …

DNA methylation signature associated with Bohring-Opitz syndrome: a new tool for functional classification of variants in ASXL genes

Z Awamleh, E Chater-Diehl, S Choufani… - European Journal of …, 2022 - nature.com
The additional sex combs-like (ASXL) gene family—encoded by ASXL1, ASXL2, and ASXL3—
is crucial for mammalian development. Pathogenic variants in the ASXL gene family are …

X-linked myotubular myopathy is associated with epigenetic alterations and is ameliorated by HDAC inhibition

JR Volpatti, MM Ghahramani-Seno, M Mansat… - Acta …, 2022 - Springer
X-linked myotubular myopathy (XLMTM) is a fatal neuromuscular disorder caused by loss of
function mutations in MTM1. At present, there are no directed therapies for XLMTM, and …

LINE-1 and Alu methylation signatures in autism spectrum disorder and their associations with the expression of autism-related genes

T Saeliw, T Permpoon, N Iadsee, T Tencomnao… - Scientific reports, 2022 - nature.com
Long interspersed nucleotide element-1 (LINE-1) and Alu elements are retrotransposons
whose abilities cause abnormal gene expression and genomic instability. Several studies …

Pathogenic variants in KMT2C result in a neurodevelopmental disorder distinct from Kleefstra and Kabuki syndromes

D Rots, S Choufani, V Faundes… - The American Journal of …, 2024 - cell.com
Trithorax-related H3K4 methyltransferases, KMT2C and KMT2D, are critical epigenetic
modifiers. Haploinsufficiency of KMT2C was only recently recognized as a cause of …

Epigenome-wide DNA methylation study of whole blood in patients with sporadic amyotrophic lateral sclerosis

Z Cai, X Jia, M Liu, X Yang, L Cui - Chinese medical journal, 2022 - mednexus.org
Background: Epigenetics, and especially DNA methylation, contributes to the pathogenesis
of sporadic amyotrophic lateral sclerosis (SALS). This study aimed to investigate the role of …

DNA methylation signatures for chromatinopathies: current challenges and future applications

Z Awamleh, S Goodman, S Choufani, R Weksberg - Human Genetics, 2024 - Springer
Pathogenic variants in genes that encode epigenetic regulators are the cause for more than
100 rare neurodevelopmental syndromes also termed “chromatinopathies”. DNA …

Rare de novo gain-of-function missense variants in DOT1L are associated with developmental delay and congenital anomalies

Z Nil, AR Deshwar, Y Huang, S Barish, X Zhang… - The American Journal of …, 2023 - cell.com
Misregulation of histone lysine methylation is associated with several human cancers and
with human developmental disorders. DOT1L is an evolutionarily conserved gene encoding …