Exploring the root microbiome: extracting bacterial community data from the soil, rhizosphere, and root endosphere

T Simmons, DF Caddell, S Deng… - JoVE (Journal of …, 2018 - jove.com
The intimate interaction between plant host and associated microorganisms is crucial in
determining plant fitness, and can foster improved tolerance to abiotic stresses and …

[HTML][HTML] Soil microbial community variation with time and soil depth in Eurasian Steppe (Inner Mongolia, China)

H Zhao, W Zheng, S Zhang, W Gao, Y Fan - Annals of Microbiology, 2021 - Springer
Purpose Soil microorganisms play an indispensable role in the material and energy cycle of
grassland ecosystems. The abundance of these organisms vary according to environmental …

Soil bacterial populations are shaped by recombination and gene-specific selection across a grassland meadow

A Crits-Christoph, MR Olm, S Diamond… - The ISME …, 2020 - academic.oup.com
Soil microbial diversity is often studied from the perspective of community composition, but
less is known about genetic heterogeneity within species. The relative impacts of clonal …

Bacterial Succession in Salt Marsh Soils Along a Short-term Invasion Chronosequence of Spartina alterniflora in the Yellow River Estuary, China

G Zhang, J Bai, Q Zhao, J Jia, W Wang, X Wang - Microbial ecology, 2020 - Springer
As an exotic plant species, Spartina alterniflora seriously threatens native ecosystem
function in Chinese coastal regions. Unveiling the dynamics of soil bacteria community …

[HTML][HTML] Spatial and temporal dynamics of Pacific oyster hemolymph microbiota across multiple scales

A Lokmer, MA Goedknegt, DW Thieltges… - Frontiers in …, 2016 - frontiersin.org
Unveiling the factors and processes that shape the dynamics of host associated microbial
communities (microbiota) under natural conditions is an important part of understanding and …

[HTML][HTML] Environmental DNA metabarcoding: a novel contrivance for documenting terrestrial biodiversity

S Hassan, Sabreena, P Poczai, BA Ganai, WH Almalki… - Biology, 2022 - mdpi.com
Simple Summary The innovative concept of environmental DNA has found its foot in aquatic
ecosystems but remains an unexplored area of research concerning terrestrial ecosystems …

[HTML][HTML] Needles in haystacks: reevaluating old paradigms for the discovery of bacterial secondary metabolites

MG Chevrette, J Handelsman - Natural Product Reports, 2021 - pubs.rsc.org
Covering: up to 2021 Natural products research is in the midst of a renaissance ushered in
by a modern understanding of microbiology and the technological explosions of genomics …

[HTML][HTML] Responses of soil microbial communities to freeze–thaw cycles in a Chinese temperate forest

C Sang, Z Xia, L Sun, H Sun, P Jiang, C Wang… - Ecological …, 2021 - Springer
Background Freeze–thaw events are common in boreal and temperate forest ecosystems
and are increasingly influenced by climate warming. Soil microorganisms play an important …

[HTML][HTML] Theobroma cacao L. agricultural soils with natural low and high cadmium (Cd) in Santander (Colombia), contain a persistent shared bacterial composition …

PFF Cáceres, LP Vélez, H Junca… - Current research in …, 2021 - Elsevier
Heavy metals can be found in soil as natural components or as product of contaminations
events; plants growing in soils are prone to bioaccumulate heavy metals on their biomass …

The switchgrass microbiome: a review of structure, function, and taxonomic distribution

R Hestrin, MR Lee, BK Whitaker… - Phytobiomes …, 2021 - Am Phytopath Society
Switchgrass (Panicum virgatum L.) has been championed as a promising bioenergy crop
due to its high productivity across a wide environmental range. The switchgrass microbiome …