Phylogenetic inferences on HIV-1 transmission: implications for the design of prevention and treatment interventions

B Brenner, MA Wainberg, M Roger - Aids, 2013 - journals.lww.com
In 30 years, the HIV-1/AIDS pandemic has evolved into an increasingly complex disease
composed of multiple epidemics, each influenced by a complex array of biological …

The role of acute and early HIV infection in the spread of HIV and implications for transmission prevention strategies in Lilongwe, Malawi: a modelling study

KA Powers, AC Ghani, WC Miller, IF Hoffman… - The Lancet, 2011 - thelancet.com
Background HIV transmission risk is higher during acute and early HIV infection than it is
during chronic infection, but the contribution of early infection to the spread of HIV is …

Test-and-treat approach to HIV/AIDS: a primer for mathematical modeling

K Nah, H Nishiura, N Tsuchiya, X Sun, Y Asai… - Theoretical Biology and …, 2017 - Springer
The public benefit of test-and-treat has induced a need to justify goodness for the public, and
mathematical modeling studies have played a key role in designing and evaluating the test …

High HIV incidence and prevalence and associated factors among young MSM, 2008

AB Balaji, KE Bowles, BC Le, G Paz-Bailey, AM Oster… - Aids, 2013 - journals.lww.com
Objective: To estimate HIV prevalence, annual HIV incidence density, and factors associated
with HIV infection among young MSM in the United States. Design: The 2008 National HIV …

Simple epidemiological dynamics explain phylogenetic clustering of HIV from patients with recent infection

EM Volz, JS Koopman, MJ Ward… - PLoS computational …, 2012 - journals.plos.org
Phylogenies of highly genetically variable viruses such as HIV-1 are potentially informative
of epidemiological dynamics. Several studies have demonstrated the presence of clusters of …

Factors associated with men in HIV-negative gay couples who practiced UAI within and outside of their relationship

JW Mitchell, AE Petroll - AIDS and Behavior, 2013 - Springer
Despite recent advances in research with gay male couples, less data exists about men who
have had UAI within and outside of their HIV-negative seroconcordant relationship …

Concurrency measures in the era of temporal network epidemiology: A review

N Masuda, JC Miller, P Holme - Journal of The Royal …, 2021 - royalsocietypublishing.org
Diseases spread over temporal networks of interaction events between individuals.
Structures of these temporal networks hold the keys to understanding epidemic propagation …

Future of phylogeny in HIV prevention

BG Brenner, MA Wainberg - JAIDS Journal of Acquired Immune …, 2013 - journals.lww.com
The success of the HIV Prevention Trials Network 052 trial has led to revisions in HIV-1
treatment guidelines. Antiretroviral therapy may reduce the risk of HIV-1 transmissions at the …

A survey of the individual-based model applied in biomedical and epidemiology

EG Nepomuceno, DF Resende, MJ Lacerda - arXiv preprint arXiv …, 2019 - arxiv.org
Individual-based model (IBM) has been used to simulate and to design control strategies for
dynamic systems that are subject to stochasticity and heterogeneity, such as infectious …

Impact of heterogeneity in sexual behavior on effectiveness in reducing HIV transmission with test-and-treat strategy

G Rozhnova, MFS van der Loeff… - PLoS computational …, 2016 - journals.plos.org
The WHO's early-release guideline for antiretroviral treatment (ART) of HIV infection based
on a recent trial conducted in 34 countries recommends starting treatment immediately upon …