Interfering peptides targeting protein–protein interactions: the next generation of drugs?
H Bruzzoni-Giovanelli, V Alezra, N Wolff, CZ Dong… - Drug Discovery …, 2018 - Elsevier
Highlights•Structure-based strategies allow more-specific targeting of protein–protein
interactions (PPIs).•Interfering peptides (IPs) become a promising alternative to small …
interactions (PPIs).•Interfering peptides (IPs) become a promising alternative to small …
Harnessing protein folding neural networks for peptide–protein docking
Highly accurate protein structure predictions by deep neural networks such as AlphaFold2
and RoseTTAFold have tremendous impact on structural biology and beyond. Here, we …
and RoseTTAFold have tremendous impact on structural biology and beyond. Here, we …
Computational design of peptide ligands
Peptides possess several attractive features when compared to small molecule and protein
therapeutics, such as high structural compatibility with target proteins, the ability to disrupt …
therapeutics, such as high structural compatibility with target proteins, the ability to disrupt …
Sub‐angstrom modeling of complexes between flexible peptides and globular proteins
A wide range of regulatory processes in the cell are mediated by flexible peptides that fold
upon binding to globular proteins. Computational efforts to model these interactions are …
upon binding to globular proteins. Computational efforts to model these interactions are …
Rosetta FlexPepDock ab-initio: Simultaneous Folding, Docking and Refinement of Peptides onto Their Receptors
Flexible peptides that fold upon binding to another protein molecule mediate a large number
of regulatory interactions in the living cell and may provide highly specific recognition …
of regulatory interactions in the living cell and may provide highly specific recognition …
High-resolution global peptide-protein docking using fragments-based PIPER-FlexPepDock
Peptide-protein interactions contribute a significant fraction of the protein-protein
interactome. Accurate modeling of these interactions is challenging due to the vast …
interactome. Accurate modeling of these interactions is challenging due to the vast …
Protein–protein interfaces in molecular glue-induced ternary complexes: classification, characterization, and prediction
H Rui, KS Ashton, J Min, C Wang, PR Potts - RSC Chemical Biology, 2023 - pubs.rsc.org
Molecular glues are a class of small molecules that stabilize the interactions between
proteins. Naturally occurring molecular glues are present in many areas of biology where …
proteins. Naturally occurring molecular glues are present in many areas of biology where …
The culprit behind amyloid beta peptide related neurotoxicity in Alzheimer's disease: oligomer size or conformation?
Since the reformulation of the amyloid cascade hypothesis to focus on oligomeric
aggregates of amyloid beta as the prime toxic species causing Alzheimer's disease, many …
aggregates of amyloid beta as the prime toxic species causing Alzheimer's disease, many …
Fully blind peptide-protein docking with pepATTRACT
Peptide-protein interactions are ubiquitous in the cell and form an important part of the
interactome. Computational docking methods can complement experimental …
interactome. Computational docking methods can complement experimental …
MDockPeP: An ab‐initio protein–peptide docking server
Protein–peptide interactions play a crucial role in a variety of cellular processes. The protein–
peptide complex structure is a key to understand the mechanisms underlying protein …
peptide complex structure is a key to understand the mechanisms underlying protein …