Ambient pH gene regulation in fungi: making connections

MA Peñalva, J Tilburn, E Bignell, HN Arst - Trends in microbiology, 2008 - cell.com
Many fungi grow over a wide pH range and their gene expression is tailored to the
environmental pH. In Aspergillus nidulans, the transcription factor PacC, an activator of …

Elucidating TOR Signaling and Rapamycin Action: Lessons from Saccharomyces cerevisiae

JL Crespo, MN Hall - Microbiology and Molecular Biology Reviews, 2002 - Am Soc Microbiol
SUMMARY TOR (target of rapamycin) is a phosphatidylinositol kinase-related protein kinase
that controls cell growth in response to nutrients. Rapamycin is an immunosuppressive and …

Sfp1 is a stress-and nutrient-sensitive regulator of ribosomal protein gene expression

RM Marion, A Regev, E Segal… - Proceedings of the …, 2004 - National Acad Sciences
Yeast cells modulate their protein synthesis capacity in response to physiological needs
through the transcriptional control of ribosomal protein (RP) genes. Here we demonstrate …

Gcn4p, a master regulator of gene expression, is controlled at multiple levels by diverse signals of starvation and stress

AG Hinnebusch, K Natarajan - Eukaryotic cell, 2002 - Am Soc Microbiol
All cells undergo rapid transcriptional reprogramming in response to environmental changes
by mobilizing transcriptional activators and repressors. Transcriptional activator proteins …

A novel single-cell screening platform reveals proteome plasticity during yeast stress responses

M Breker, M Gymrek, M Schuldiner - Journal of Cell Biology, 2013 - rupress.org
Uncovering the mechanisms underlying robust responses of cells to stress is crucial for our
understanding of cellular physiology. Indeed, vast amounts of data have been collected on …

Stress-activated genomic expression changes serve a preparative role for impending stress in yeast

DB Berry, AP Gasch - Molecular biology of the cell, 2008 - Am Soc Cell Biol
Yeast cells respond to stress by mediating condition-specific gene expression changes and
by mounting a common response to many stresses, called the environmental stress …

[HTML][HTML] Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae

H Yoshimoto, K Saltsman, AP Gasch, HX Li… - Journal of Biological …, 2002 - ASBMB
In Saccharomyces cerevisiae, the Ca 2+/calmodulin-dependent protein phosphatase,
calcineurin, is activated by specific environmental conditions, including exposure to Ca 2+ …

Transcriptional regulation in yeast during diauxic shift and stationary phase

L Galdieri, S Mehrotra, S Yu… - Omics: a journal of …, 2010 - liebertpub.com
The preferred source of carbon and energy for yeast cells is glucose. When yeast cells are
grown in liquid cultures, they metabolize glucose predominantly by glycolysis, releasing …

Hog1: 20 years of discovery and impact

JL Brewster, MC Gustin - Science signaling, 2014 - science.org
The protein kinase Hog1 (high osmolarity glycerol 1) was discovered 20 years ago, being
revealed as a central signaling mediator during osmoregulation in the budding yeast …

Identifying regulatory networks by combinatorial analysis of promoter elements

Y Pilpel, P Sudarsanam, GM Church - Nature genetics, 2001 - nature.com
Several computational methods based on microarray data are currently used to study
genome-wide transcriptional regulation. Few studies, however, address the combinatorial …