Metabolome-guided genome mining of RiPP natural products

MM Zdouc, JJJ van der Hooft, MH Medema - Trends in Pharmacological …, 2023 - cell.com
Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a
chemically diverse class of metabolites. Many RiPPs show potent biological activities that …

MS/MS-based molecular networking: an efficient approach for natural products Dereplication

GF Qin, X Zhang, F Zhu, ZQ Huo, QQ Yao, Q Feng… - Molecules, 2022 - mdpi.com
Natural products (NPs) have historically played a primary role in the discovery of small-
molecule drugs. However, due to the advent of other methodologies and the drawbacks of …

Correlative metabologenomics of 110 fungi reveals metabolite–gene cluster pairs

LK Caesar, FA Butun, MT Robey, NJ Ayon… - Nature chemical …, 2023 - nature.com
Natural products research increasingly applies-omics technologies to guide molecular
discovery. While the combined analysis of genomic and metabolomic datasets has proved …

Integrating Genomics and Metabolomics for the Targeted Discovery of New Cyclopeptides with Antifungal Activity from a Marine-Derived Fungus Beauveria felina

M Jiang, S Chen, X Lu, H Guo, S Chen… - Journal of Agricultural …, 2023 - ACS Publications
Sour rot, caused by Geotrichum citri-aurantii, is a major postharvest disease in citrus and
results in significant economic losses. The genus Beauveria is recognized as a promising …

High-throughput screening of natural product and synthetic molecule libraries for antibacterial drug discovery

NJ Ayon - Metabolites, 2023 - mdpi.com
Due to the continued emergence of resistance and a lack of new and promising antibiotics,
bacterial infection has become a major public threat. High-throughput screening (HTS) …

[HTML][HTML] Advances in the integration of metabolomics and metagenomics for human gut microbiome and their clinical applications

F Puig-Castellví, R Pacheco-Tapia, M Deslande… - TrAC Trends in …, 2023 - Elsevier
The human microbiome and its metabolic output play an important role in shaping human
health and disease. The host-microbe crosstalk is often characterised using metabolomics …

Chemistry and biosynthesis of bacterial polycyclic xanthone natural products

L Kong, Z Deng, D You - Natural Product Reports, 2022 - pubs.rsc.org
Covering: up to the end of 2021 Bacterial polycyclic xanthone natural products (BPXNPs)
are a growing family of natural xanthones featuring a pentangular architecture with various …

Metabolomics and Genomics Enable the Discovery of a New Class of Nonribosomal Peptidic Metallophores from a Marine Micromonospora

Q Wu, BA Bell, JX Yan, MG Chevrette… - Journal of the …, 2022 - ACS Publications
Although microbial genomes harbor an abundance of biosynthetic gene clusters, there
remain substantial technological gaps that impair the direct correlation of newly discovered …

[HTML][HTML] Open data and algorithms for open science in AI-driven molecular informatics

HO Brinkhaus, K Rajan, J Schaub, A Zielesny… - Current Opinion in …, 2023 - Elsevier
Recent years have seen a sharp increase in the development of deep learning and artificial
intelligence-based molecular informatics. There has been a growing interest in applying …

New trends in synthetic drugs and natural products targeting 20S proteasomes in cancers

H Atta, N Alzahaby, NM Hamdy, SH Emam… - Bioorganic …, 2023 - Elsevier
Cancer is a global health challenge that remains to be a field of extensive research aiming
to find new anticancer therapeutics. The 20S proteasome complex is one of the targets of …