[HTML][HTML] Structure and formation of Z-DNA and Z-RNA
Despite structural differences between the right-handed conformations of A-RNA and B-
DNA, both nucleic acids adopt very similar, left-handed Z-conformations. In contrast to their …
DNA, both nucleic acids adopt very similar, left-handed Z-conformations. In contrast to their …
Z-RNA biology: a central role in the innate immune response?
Z-RNA is a higher-energy, left-handed conformation of RNA, whose function has remained
elusive. A growing body of work alludes to regulatory roles for Z-RNA in the immune …
elusive. A growing body of work alludes to regulatory roles for Z-RNA in the immune …
Mg2+ ions: do they bind to nucleobase nitrogens?
Given the many roles proposed for Mg2+ in nucleic acids, it is essential to accurately
determine their binding modes. Here, we surveyed the PDB to classify Mg2+ inner-sphere …
determine their binding modes. Here, we surveyed the PDB to classify Mg2+ inner-sphere …
Z-Form Adoption of Nucleic Acid is a Multi-Step Process Which Proceeds through a Melted Intermediate
The left-handed Z-conformation of nucleic acids can be adopted by both DNA and RNA
when bound by Zα domains found within a variety of innate immune response proteins. Zα …
when bound by Zα domains found within a variety of innate immune response proteins. Zα …
[HTML][HTML] Intrinsic conformational energetics associated with the glycosyl torsion in DNA: a quantum mechanical study
N Foloppe, B Hartmann, L Nilsson, AD MacKerell - Biophysical Journal, 2002 - cell.com
The glycosyl torsion (χ) in nucleic acids has long been recognized to be a major determinant
of their conformational properties. χ torsional energetics were systematically mapped in …
of their conformational properties. χ torsional energetics were systematically mapped in …
A single watson− crick G· C base pair in water: aqueous hydrogen bonds in hydrophobic cavities
T Sawada, M Fujita - Journal of the American Chemical Society, 2010 - ACS Publications
Hydrogen bond (H-bond) formation in water has been a challenging task because water
molecules are constant competitors. In biological systems, however, stable H-bonds are …
molecules are constant competitors. In biological systems, however, stable H-bonds are …
Hydration of short DNA, RNA and 2′‐OMe oligonucleotides determined by osmotic stressing
E Rozners, J Moulder - Nucleic acids research, 2004 - academic.oup.com
Studies on hydration are important for better understanding of structure and function of
nucleic acids. We compared the hydration of self‐complementary DNA, RNA and 2′‐O …
nucleic acids. We compared the hydration of self‐complementary DNA, RNA and 2′‐O …
[HTML][HTML] Searching for new Z-DNA/Z-RNA binding proteins based on structural similarity to experimentally validated Zα domain
Z-DNA and Z-RNA are functionally important left-handed structures of nucleic acids, which
play a significant role in several molecular and biological processes including DNA …
play a significant role in several molecular and biological processes including DNA …
'Z-DNA like'fragments in RNA: a recurring structural motif with implications for folding, RNA/protein recognition and immune response
Since the work of Alexander Rich, who solved the first Z-DNA crystal structure, we have
known that d (CpG) steps can adopt a particular structure that leads to forming left-handed …
known that d (CpG) steps can adopt a particular structure that leads to forming left-handed …
The structures of non-CG-repeat Z-DNAs co-crystallized with the Z-DNA-binding domain, hZα ADAR1
SC Ha, J Choi, HY Hwang, A Rich, YG Kim… - Nucleic acids …, 2009 - academic.oup.com
The Z-DNA conformation preferentially occurs at alternating purine-pyrimidine repeats, and
is specifically recognized by Zα domains identified in several Z-DNA-binding proteins. The …
is specifically recognized by Zα domains identified in several Z-DNA-binding proteins. The …