Polyploid phylogenetics
CJ Rothfels - New Phytologist, 2021 - Wiley Online Library
Polyploidy is a dominant feature of extant plant diversity. However, major research
questions, including whether polyploidy is important to long‐term evolution or is just …
questions, including whether polyploidy is important to long‐term evolution or is just …
A roadmap for research in octoploid strawberry
VM Whitaker, SJ Knapp, MA Hardigan… - Horticulture …, 2020 - academic.oup.com
The cultivated strawberry (Fragaria× ananassa) is an allo-octoploid species, originating
nearly 300 years ago from wild progenitors from the Americas. Since that time the strawberry …
nearly 300 years ago from wild progenitors from the Americas. Since that time the strawberry …
HyDe: a Python package for genome-scale hybridization detection
PD Blischak, J Chifman, AD Wolfe… - Systematic …, 2018 - academic.oup.com
The analysis of hybridization and gene flow among closely related taxa is a common goal for
researchers studying speciation and phylogeography. Many methods for hybridization …
researchers studying speciation and phylogeography. Many methods for hybridization …
[HTML][HTML] Genome-wide simple sequence repeats (SSR) markers discovered from whole-genome sequence comparisons of multiple spinach accessions
The availability of well-assembled genome sequences and reduced sequencing costs have
enabled the resequencing of many additional accessions in several crops, thus facilitating …
enabled the resequencing of many additional accessions in several crops, thus facilitating …
Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae)
Hybridization, incomplete lineage sorting, and phylogenetic error produce similar
incongruence patterns, representing a great challenge for phylogenetic reconstruction …
incongruence patterns, representing a great challenge for phylogenetic reconstruction …
Tracing the diploid ancestry of the cultivated octoploid strawberry
The commercial strawberry, Fragaria× ananassa, is a recent allo-octoploid that is cultivated
worldwide. However, other than Fragaria vesca, which is universally accepted one of its …
worldwide. However, other than Fragaria vesca, which is universally accepted one of its …
Functional trait divergence and trait plasticity confer polyploid advantage in heterogeneous environments
Polyploidy, or whole‐genome duplication often with hybridization, is common in eukaryotes
and is thought to drive ecological and evolutionary success, especially in plants. The …
and is thought to drive ecological and evolutionary success, especially in plants. The …
Genomic signatures of strawberry domestication and diversification
Z Fan, VM Whitaker - The Plant Cell, 2024 - academic.oup.com
Cultivated strawberry (Fragaria× ananassa) has a brief history of less than 300 yr, beginning
with the hybridization of octoploids Fragaria chiloensis and Fragaria virginiana. Here we …
with the hybridization of octoploids Fragaria chiloensis and Fragaria virginiana. Here we …
[HTML][HTML] Complete chloroplast genome sequence of Barleria prionitis, comparative chloroplast genomics and phylogenetic relationships among Acanthoideae
DA Alzahrani, SS Yaradua, EJ Albokhari, A Abba - BMC genomics, 2020 - Springer
Background The plastome of medicinal and endangered species in Kingdom of Saudi
Arabia, Barleria prionitis was sequenced. The plastome was compared with that of seven …
Arabia, Barleria prionitis was sequenced. The plastome was compared with that of seven …
Revisiting the origin of octoploid strawberry
Fig. 1| Phylogenomics of octoploid subgenomes. a, Summary of the phylogenetic hypothesis
of Edger et al. 1; F. moschata subgenomes are indicated by asterisks. Bold lines represent …
of Edger et al. 1; F. moschata subgenomes are indicated by asterisks. Bold lines represent …