The gene ontology knowledgebase in 2023

SA Aleksander, J Balhoff, S Carbon, JM Cherry… - Genetics, 2023 - academic.oup.com
Abstract The Gene Ontology (GO) knowledgebase (http://geneontology. org) is a
comprehensive resource concerning the functions of genes and gene products (proteins …

Trends in the approval of cancer therapies by the FDA in the twenty-first century

EC Scott, AC Baines, Y Gong, R Moore Jr… - Nature Reviews Drug …, 2023 - nature.com
The cancer treatment landscape has changed dramatically since the turn of the century,
resulting in substantial improvements in outcomes for patients. This Review summarizes …

[HTML][HTML] Functional unknomics: Systematic screening of conserved genes of unknown function

JJ Rocha, SA Jayaram, TJ Stevens, N Muschalik… - PLoS …, 2023 - journals.plos.org
The human genome encodes approximately 20,000 proteins, many still uncharacterised. It
has become clear that scientific research tends to focus on well-studied proteins, leading to …

[HTML][HTML] Droplet-based single-cell joint profiling of histone modifications and transcriptomes

Y Xie, C Zhu, Z Wang, M Tastemel, L Chang… - Nature Structural & …, 2023 - nature.com
Abstract We previously reported Paired-Tag, a combinatorial indexing-based method that
can simultaneously map histone modifications and gene expression at single-cell resolution …

[PDF][PDF] Engineering RNA export for measurement and manipulation of living cells

F Horns, JA Martinez, C Fan, M Haque, JM Linton… - Cell, 2023 - cell.com
A system for programmable export of RNA molecules from living cells would enable both
non-destructive monitoring of cell dynamics and engineering of cells capable of delivering …

The hagfish genome and the evolution of vertebrates

F Marlétaz, N Timoshevskaya, VA Timoshevskiy… - Nature, 2024 - nature.com
As the only surviving lineages of jawless fishes, hagfishes and lampreys provide a critical
window into early vertebrate evolution1–3. Here, we investigate the complex history, timing …

[HTML][HTML] Spinal cord repair is modulated by the neurogenic factor Hb-egf under direction of a regeneration-associated enhancer

V Cigliola, A Shoffner, N Lee, J Ou, TJ Gonzalez… - Nature …, 2023 - nature.com
Unlike adult mammals, zebrafish regenerate spinal cord tissue and recover locomotor ability
after a paralyzing injury. Here, we find that ependymal cells in zebrafish spinal cords …

[HTML][HTML] The Gene Ontology knowledgebase in 2023

GO Central, SA Aleksander, J Balhoff, S Carbon… - Genetics, 2023 - ncbi.nlm.nih.gov
Abstract The Gene Ontology (GO) knowledgebase (http://geneontology. org) is a
comprehensive resource concerning the functions of genes and gene products (proteins …

[HTML][HTML] Identification of constrained sequence elements across 239 primate genomes

LFK Kuderna, JC Ulirsch, S Rashid, M Ameen… - Nature, 2024 - nature.com
Noncoding DNA is central to our understanding of human gene regulation and complex
diseases,, and measuring the evolutionary sequence constraint can establish the functional …

[HTML][HTML] Integrative multi-omics and systems bioinformatics in translational neuroscience: A data mining perspective

LM O'Connor, BA O'Connor, SB Lim, J Zeng… - Journal of …, 2023 - Elsevier
Bioinformatic analysis of large and complex omics datasets has become increasingly useful
in modern day biology by providing a great depth of information, with its application to …