Heterosis and hybrid crop breeding: a multidisciplinary review

MR Labroo, AJ Studer, JE Rutkoski - Frontiers in Genetics, 2021 - frontiersin.org
Although hybrid crop varieties are among the most popular agricultural innovations, the
rationale for hybrid crop breeding is sometimes misunderstood. Hybrid breeding is slower …

Crop genomic selection with deep learning and environmental data: A survey

S Jubair, M Domaratzki - Frontiers in Artificial Intelligence, 2023 - frontiersin.org
Machine learning techniques for crop genomic selections, especially for single-environment
plants, are well-developed. These machine learning models, which use dense genome …

The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment

AR Rogers, JC Dunne, C Romay, M Bohn, ES Buckler… - G3, 2021 - academic.oup.com
High-dimensional and high-throughput genomic, field performance, and environmental data
are becoming increasingly available to crop breeding programs, and their integration can …

[PDF][PDF] Environment-specific genomic prediction ability in maize using environmental covariates depends on environmental similarity to training data

AR Rogers, JB Holland - G3, 2022 - academic.oup.com
Technology advances have made possible the collection of a wealth of genomic,
environmental, and phenotypic data for use in plant breeding. Incorporation of …

Genomic selection for grain yield in the CIMMYT wheat breeding program—status and perspectives

P Juliana, RP Singh, HJ Braun… - Frontiers in Plant …, 2020 - frontiersin.org
Genomic breeding technologies offer new opportunities for grain yield (GY) improvement in
common wheat. In this study, we have evaluated the potential of genomic selection (GS) in …

GPTransformer: a transformer-based deep learning method for predicting Fusarium related traits in barley

S Jubair, JR Tucker, N Henderson… - Frontiers in plant …, 2021 - frontiersin.org
Fusarium head blight (FHB) incited by Fusarium graminearum Schwabe is a devastating
disease of barley and other cereal crops worldwide. Fusarium head blight is associated with …

Multi-generation genomic prediction of maize yield using parametric and non-parametric sparse selection indices

M Lopez-Cruz, Y Beyene, M Gowda, J Crossa… - Heredity, 2021 - nature.com
Genomic prediction models are often calibrated using multi-generation data. Over time, as
data accumulates, training data sets become increasingly heterogeneous. Differences in …

Optimizing predictions in IRRI's rice drought breeding program by leveraging 17 years of historical data and pedigree information

A Khanna, M Anumalla, M Catolos, S Bhosale… - Frontiers in Plant …, 2022 - frontiersin.org
Prediction models based on pedigree and/or molecular marker information are now an
inextricable part of the crop breeding programs and have led to increased genetic gains in …

Comparing artificial‐intelligence techniques with state‐of‐the‐art parametric prediction models for predicting soybean traits

S Ray, D Jarquin, R Howard - The Plant Genome, 2023 - Wiley Online Library
Abstract Soybean [Glycine max (L.) Merr.] is a significant source of protein and oil and is also
widely used as animal feed. Thus, developing lines that are superior in terms of yield …

Sparse kernel models provide optimization of training set design for genomic prediction in multiyear wheat breeding data

M Lopez‐Cruz, S Dreisigacker… - The Plant …, 2022 - Wiley Online Library
The success of genomic selection (GS) in breeding schemes relies on its ability to provide
accurate predictions of unobserved lines at early stages. Multigeneration data provides …