[PDF][PDF] Pancreatic cancer: Advances and challenges

CJ Halbrook, CA Lyssiotis, MP di Magliano, A Maitra - Cell, 2023 - cell.com
Pancreatic ductal adenocarcinoma (PDAC) remains one of the deadliest cancers. Significant
efforts have largely defined major genetic factors driving PDAC pathogenesis and …

Metastasis

S Gerstberger, Q Jiang, K Ganesh - Cell, 2023 - cell.com
Most cancer-associated deaths occur due to metastasis, yet our understanding of metastasis
as an evolving, heterogeneous, systemic disease and of how to effectively treat it is still …

SpatialData: an open and universal data framework for spatial omics

L Marconato, G Palla, KA Yamauchi, I Virshup… - Nature …, 2024 - nature.com
Spatially resolved omics technologies are transforming our understanding of biological
tissues. However, the handling of uni-and multimodal spatial omics datasets remains a …

Principles and challenges of modeling temporal and spatial omics data

B Velten, O Stegle - Nature Methods, 2023 - nature.com
Studies with temporal or spatial resolution are crucial to understand the molecular dynamics
and spatial dependencies underlying a biological process or system. With advances in high …

Benchmarking spatial clustering methods with spatially resolved transcriptomics data

Z Yuan, F Zhao, S Lin, Y Zhao, J Yao, Y Cui… - Nature …, 2024 - nature.com
Spatial clustering, which shares an analogy with single-cell clustering, has expanded the
scope of tissue physiology studies from cell-centroid to structure-centroid with spatially …

A survey of open questions in adaptive therapy: Bridging mathematics and clinical translation

J West, F Adler, J Gallaher, M Strobl, R Brady-Nicholls… - Elife, 2023 - elifesciences.org
Adaptive therapy is a dynamic cancer treatment protocol that updates (or 'adapts') treatment
decisions in anticipation of evolving tumor dynamics. This broad term encompasses many …

[HTML][HTML] Combining preclinical tools and models to unravel tumor complexity: jump into the next dimension

G Miserocchi, M Bocchini, M Cortesi, C Arienti… - Frontiers in …, 2023 - frontiersin.org
Tumors are complex and heterogeneous diseases characterized by an intricate milieu and
dynamically in connection with surrounding and distant tissues. In the last decades, great …

[HTML][HTML] Dynamic links between mechanical forces and metabolism shape the tumor milieu

R Bertolio, F Napoletano, G Del Sal - Current Opinion in Cell Biology, 2023 - Elsevier
Cell function relies on the spatiotemporal dynamics of metabolic reactions. In all
physiopathological processes of tissues, mechanical forces impact the structure and function …

Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics

YM Park, DC Lin - nature communications, 2023 - nature.com
Spatial transcriptomic profiling of cancer has enabled spatial delineation of malignant
transcriptional heterogeneity, intercellular communication, and organization of …

Cellular senescence is associated with the spatial evolution toward a higher metastatic phenotype in colorectal cancer

SS Park, YK Lee, YW Choi, SB Lim, SH Park, HK Kim… - Cell Reports, 2024 - cell.com
In this study, we explore the dynamic process of colorectal cancer progression, emphasizing
the evolution toward a more metastatic phenotype. The term" evolution" as used in this study …