[HTML][HTML] Clinical metagenomics

CY Chiu, SA Miller - Nature Reviews Genetics, 2019 - nature.com
Clinical metagenomic next-generation sequencing (mNGS), the comprehensive analysis of
microbial and host genetic material (DNA and RNA) in samples from patients, is rapidly …

Clinical metagenomic next-generation sequencing for pathogen detection

W Gu, S Miller, CY Chiu - Annual Review of Pathology …, 2019 - annualreviews.org
Nearly all infectious agents contain DNA or RNA genomes, making sequencing an attractive
approach for pathogen detection. The cost of high-throughput or next-generation …

[HTML][HTML] Viral Metagenomics Revealed Sendai Virus and Coronavirus Infection of Malayan Pangolins (Manis javanica)

P Liu, W Chen, JP Chen - Viruses, 2019 - mdpi.com
Pangolins are endangered animals in urgent need of protection. Identifying and cataloguing
the viruses carried by pangolins is a logical approach to evaluate the range of potential …

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid

S Miller, SN Naccache, E Samayoa… - Genome …, 2019 - genome.cshlp.org
Metagenomic next-generation sequencing (mNGS) for pan-pathogen detection has been
successfully tested in proof-of-concept case studies in patients with acute illness of unknown …

CRISPR systems for COVID-19 diagnosis

H Rahimi, M Salehiabar, M Barsbay, M Ghaffarlou… - ACS …, 2021 - ACS Publications
The emergence of the new coronavirus 2019 (COVID-19) was first seen in December 2019,
which has spread rapidly and become a global pandemic. The number of cases of COVID …

[HTML][HTML] Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

AL Greninger, SN Naccache, S Federman, G Yu… - Genome medicine, 2015 - Springer
We report unbiased metagenomic detection of chikungunya virus (CHIKV), Ebola virus
(EBOV), and hepatitis C virus (HCV) from four human blood samples by MinION nanopore …

Actionable diagnosis of neuroleptospirosis by next-generation sequencing

MR Wilson, SN Naccache, E Samayoa… - … England Journal of …, 2014 - Mass Medical Soc
A 14-year-old boy with severe combined immunodeficiency presented three times to a
medical facility over a period of 4 months with fever and headache that progressed to …

The evolution of Ebola virus: Insights from the 2013–2016 epidemic

EC Holmes, G Dudas, A Rambaut, KG Andersen - Nature, 2016 - nature.com
The 2013–2016 epidemic of Ebola virus disease in West Africa was of unprecedented
magnitude and changed our perspective on this lethal but sporadically emerging virus. This …

[HTML][HTML] Understanding the mechanisms of viral and bacterial coinfections in bovine respiratory disease: a comprehensive literature review of experimental evidence

M Gaudino, B Nagamine, MF Ducatez, G Meyer - Veterinary research, 2022 - Springer
Bovine respiratory disease (BRD) is one of the most important diseases impacting the global
cattle industry, resulting in significant economic loss. Commonly referred to as shipping …

[HTML][HTML] Library preparation for next generation sequencing: A review of automation strategies

JF Hess, TA Kohl, M Kotrová, K Rönsch… - Biotechnology …, 2020 - Elsevier
Next generation sequencing is in the process of evolving from a technology used for
research purposes to one which is applied in clinical diagnostics. Recently introduced high …