Macromolecular modeling and design in Rosetta: recent methods and frameworks
The Rosetta software for macromolecular modeling, docking and design is extensively used
in laboratories worldwide. During two decades of development by a community of …
in laboratories worldwide. During two decades of development by a community of …
[HTML][HTML] Predictive chemistry: machine learning for reaction deployment, reaction development, and reaction discovery
The field of predictive chemistry relates to the development of models able to describe how
molecules interact and react. It encompasses the long-standing task of computer-aided …
molecules interact and react. It encompasses the long-standing task of computer-aided …
[HTML][HTML] Can electric fields drive chemistry for an aqueous microdroplet?
Reaction rates of common organic reactions have been reported to increase by one to six
orders of magnitude in aqueous microdroplets compared to bulk solution, but the reasons for …
orders of magnitude in aqueous microdroplets compared to bulk solution, but the reasons for …
Electric-field mediated chemistry: uncovering and exploiting the potential of (oriented) electric fields to exert chemical catalysis and reaction control
This Perspective discusses oriented external-electric-fields (OEEF), and other electric-field
types, as “smart reagents”, which enable in principle control over wide-ranging aspects of …
types, as “smart reagents”, which enable in principle control over wide-ranging aspects of …
Enzymatic noncovalent synthesis
Enzymatic reactions and noncovalent (ie, supramolecular) interactions are two fundamental
nongenetic attributes of life. Enzymatic noncovalent synthesis (ENS) refers to a process …
nongenetic attributes of life. Enzymatic noncovalent synthesis (ENS) refers to a process …
[HTML][HTML] Data-informed discovery of hydrolytic nanozymes
S Li, Z Zhou, Z Tie, B Wang, M Ye, L Du, R Cui… - Nature …, 2022 - nature.com
Nanozyme is a collection of nanomaterials with enzyme-like activity but higher
environmental tolerance and long-term stability than their natural counterparts. Improving …
environmental tolerance and long-term stability than their natural counterparts. Improving …
Large-scale production of enzymes for biotechnology uses
Enzymes are biocatalysts that speed up the chemical reaction to obtain the final valuable
product/s. Biotechnology has revolutionized the use of traditional enzymes to be applicable …
product/s. Biotechnology has revolutionized the use of traditional enzymes to be applicable …
Automated in silico design of homogeneous catalysts
M Foscato, VR Jensen - ACS catalysis, 2020 - ACS Publications
Catalyst discovery is increasingly relying on computational chemistry, and many of the
computational tools are currently being automated. The state of this automation and the …
computational tools are currently being automated. The state of this automation and the …
Decoding chemical information from vibrational spectroscopy data: Local vibrational mode theory
Modern vibrational spectroscopy is more than just an analytical tool. Information about the
electronic structure of a molecule, the strength of its bonds, and its conformational flexibility …
electronic structure of a molecule, the strength of its bonds, and its conformational flexibility …
A two-directional vibrational probe reveals different electric field orientations in solution and an enzyme active site
The catalytic power of an electric field depends on its magnitude and orientation with respect
to the reactive chemical species. Understanding and designing new catalysts for …
to the reactive chemical species. Understanding and designing new catalysts for …