Hi-C techniques: from genome assemblies to transcription regulation
H Šimková, AS Câmara… - Journal of Experimental …, 2024 - academic.oup.com
The invention of chromosome conformation capture (3C) techniques, in particular the key
method Hi-C providing genome-wide information about chromatin contacts, revolutionized …
method Hi-C providing genome-wide information about chromatin contacts, revolutionized …
[HTML][HTML] Single-cell mapping of cell-type specific chromatin architecture in the central nervous system
L Zhang, M Bartosovic - Current Opinion in Structural Biology, 2024 - Elsevier
Determining how chromatin is structured in the nucleus is critical to studying its role in gene
regulation. Recent advances in the analysis of single-cell chromatin architecture have …
regulation. Recent advances in the analysis of single-cell chromatin architecture have …
scGHOST: Identifying single-cell 3D genome subcompartments
Abstract Single-cell Hi-C (scHi-C) technologies allow for probing of genome-wide cell-to-cell
variability in three-dimensional (3D) genome organization from individual cells …
variability in three-dimensional (3D) genome organization from individual cells …
Hijacked enhancer–promoter and silencer–promoter loops in cancer
X Wang, F Yue - Current Opinion in Genetics & Development, 2024 - Elsevier
Highlights•3D genome organization undergoes dramatic changes in cancer.•Oncogenes
can be ectopically activated by SV-induced enhancer hijacking.•Tumor suppressor genes …
can be ectopically activated by SV-induced enhancer hijacking.•Tumor suppressor genes …
Enhancers dysfunction in the 3D genome of cancer cells
G Della Chiara, C Jiménez, M Virdi… - Frontiers in Cell and …, 2023 - frontiersin.org
Eukaryotic genomes are spatially organized inside the cell nucleus, forming a
threedimensional (3D) architecture that allows for spatial separation of nuclear processes …
threedimensional (3D) architecture that allows for spatial separation of nuclear processes …
Stratifying TAD boundaries pinpoints focal genomic regions of regulation, damage, and repair
B Chen, C Ren, Z Ouyang, J Xu, K Xu… - Briefings in …, 2024 - academic.oup.com
Advances in chromatin mapping have exposed the complex chromatin hierarchical
organization in mammals, including topologically associating domains (TADs) and their …
organization in mammals, including topologically associating domains (TADs) and their …
Four-Dimensional Mesoscale Liquid Model of Nucleus Resolves Chromatin's Radial Organization
Recent advances chromatin capture, imaging techniques, and polymer modeling have
dramatically enhanced quantitative understanding of chromosomal folding. However, the …
dramatically enhanced quantitative understanding of chromosomal folding. However, the …
Seeing genomes
T Misteli - Histochemistry and Cell Biology, 2024 - Springer
The proverbial “seeing is believing” is often easier said than done. Many of the most
fascinating aspects of nature can be difficult to visualize: to see distant stars requires …
fascinating aspects of nature can be difficult to visualize: to see distant stars requires …
Innovations in 3D printed individualized bone prosthesis materials: revolutionizing orthopedic surgery: a review
Z Qu, J Yue, N Song, S Li - International Journal of Surgery, 2024 - journals.lww.com
The advent of personalized bone prosthesis materials and their integration into orthopedic
surgery has made a profound impact, primarily as a result of the incorporation of three …
surgery has made a profound impact, primarily as a result of the incorporation of three …
Unlocking Rare Diseases Genetics: Insights from Genome-Wide Association Studies and Single Nucleotide Polymorphisms
Genome-wide association studies (GWAS) are powerful tools for identifying genetic variants
associated with complex diseases. However, their utility is limited in elucidating the genetics …
associated with complex diseases. However, their utility is limited in elucidating the genetics …