[HTML][HTML] Genomic selection for forest tree improvement: Methods, achievements and perspectives

VG Lebedev, TN Lebedeva, AI Chernodubov… - Forests, 2020 - mdpi.com
The breeding of forest trees is only a few decades old, and is a much more complicated,
longer, and expensive endeavor than the breeding of agricultural crops. One breeding cycle …

Gravity sensing and responses in the coordination of the shoot gravitropic setpoint angle

N Kawamoto, MT Morita - New Phytologist, 2022 - Wiley Online Library
Gravity is one of the fundamental environmental cues that affect plant development. Indeed,
the plant architecture in the shoots and roots is modulated by gravity. Stems grow vertically …

[HTML][HTML] Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars

G Hu, J Feng, X Xiang, J Wang, J Salojärvi, C Liu… - Nature …, 2022 - nature.com
Lychee is an exotic tropical fruit with a distinct flavor. The genome of cultivar 'Feizixiao'was
assembled into 15 pseudochromosomes, totaling~ 470 Mb. High heterozygosity (2.27%) …

[HTML][HTML] Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere

BF Zhou, S Yuan, AA Crowl, YY Liang, Y Shi… - Nature …, 2022 - nature.com
Northern Hemisphere forests changed drastically in the early Eocene with the diversification
of the oak family (Fagaceae). Cooling climates over the next 20 million years fostered the …

[HTML][HTML] The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars

J Salojärvi, A Rambani, Z Yu, R Guyot, S Strickler… - Nature …, 2024 - nature.com
Coffea arabica, an allotetraploid hybrid of Coffea eugenioides and Coffea canephora, is the
source of approximately 60% of coffee products worldwide, and its cultivated accessions …

Exome sequencing highlights the role of wild-relative introgression in shaping the adaptive landscape of the wheat genome

F He, R Pasam, F Shi, S Kant, G Keeble-Gagnere… - Nature …, 2019 - nature.com
Introgression is a potential source of beneficial genetic diversity. The contribution of
introgression to adaptive evolution and improvement of wheat as it was disseminated …

[HTML][HTML] Population sequencing enhances understanding of tea plant evolution

X Wang, H Feng, Y Chang, C Ma, L Wang… - Nature …, 2020 - nature.com
Tea is an economically important plant characterized by a large genome, high
heterozygosity, and high species diversity. In this study, we assemble a 3.26-Gb high-quality …

[HTML][HTML] Genome structure-based Juglandaceae phylogenies contradict alignment-based phylogenies and substitution rates vary with DNA repair genes

YM Ding, XX Pang, Y Cao, WP Zhang… - Nature …, 2023 - nature.com
In lineages of allopolyploid origin, sets of homoeologous chromosomes may coexist that
differ in gene content and syntenic structure. Presence or absence of genes and …

The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation

M Rendón-Anaya, E Ibarra-Laclette… - Proceedings of the …, 2019 - National Acad Sciences
The avocado, Persea americana, is a fruit crop of immense importance to Mexican
agriculture with an increasing demand worldwide. Avocado lies in the anciently diverged …

[HTML][HTML] Genomic evidence for homoploid hybrid speciation between ancestors of two different genera

Z Wang, M Kang, J Li, Z Zhang, Y Wang, C Chen… - Nature …, 2022 - nature.com
Homoploid hybrid speciation (HHS) has been increasingly recognized as occurring widely
during species diversification of both plants and animals. However, previous studies on HHS …