Knowing phylogenetic relationships among species is fundamental for many studies in
biology. An accurate phylogenetic tree underpins our understanding of the major transitions …

Cancer is one of the leading causes of death worldwide. There is a definite need for novel
approaches to improve the diagnostics and treatment of cancers. The pathological …

A central question in evolutionary biology is whether sponges or ctenophores (comb jellies)
are the sister group to all other animals. These alternative phylogenetic hypotheses imply …

Phylogenetic trees and data are often stored in incompatible and inconsistent formats. The
outputs of software tools that contain trees with analysis findings are often not compatible …

Elaboration of Bayesian phylogenetic inference methods has continued at pace in recent
years with major new advances in nearly all aspects of the joint modelling of evolutionary …

Origins of an alpine flora The evolution of high mountain floras is strongly influenced by
tectonic and climatic history. Ding et al. document the timing, tempo, and mode by which the …

Abstract HYpothesis testing using PHYlogenies (HyPhy) is a scriptable, open-source
package for fitting a broad range of evolutionary models to multiple sequence alignments …

The tropics are the source of most biodiversity yet inadequate sampling obscures answers to
fundamental questions about how this diversity evolves. We leveraged samples assembled …

We present the ggtreeExtra package for visualizing heterogeneous data with a phylogenetic
tree in a circular or rectangular layout (https://www. bioconductor. org/packages/ggtreeExtra) …

Phylogenetic studies of geographic range evolution are increasingly using statistical model
selection methods to choose among variants of the dispersal‐extinction‐cladogenesis …