Mycobiome diversity: high-throughput sequencing and identification of fungi

RH Nilsson, S Anslan, M Bahram… - Nature Reviews …, 2019 - nature.com
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …

Perspectives and benefits of high-throughput long-read sequencing in microbial ecology

L Tedersoo, M Albertsen, S Anslan… - Applied and …, 2021 - Am Soc Microbiol
Short-read, high-throughput sequencing (HTS) methods have yielded numerous important
insights into microbial ecology and function. Yet, in many instances short-read HTS …

Soil microbiome indicators can predict crop growth response to large-scale inoculation with arbuscular mycorrhizal fungi

S Lutz, N Bodenhausen, J Hess, A Valzano-Held… - Nature …, 2023 - nature.com
Alternative solutions to mineral fertilizers and pesticides that reduce the environmental
impact of agriculture are urgently needed. Arbuscular mycorrhizal fungi (AMF) can enhance …

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

S Banerjee, F Walder, L Büchi, M Meyer… - The ISME …, 2019 - academic.oup.com
Root-associated microbes play a key role in plant performance and productivity, making
them important players in agroecosystems. So far, very few studies have assessed the …

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution

BJ Callahan, J Wong, C Heiner, S Oh… - Nucleic acids …, 2019 - academic.oup.com
Targeted PCR amplification and high-throughput sequencing (amplicon sequencing) of 16S
rRNA gene fragments is widely used to profile microbial communities. New long-read …

Biotic homogenization, lower soil fungal diversity and fewer rare taxa in arable soils across Europe

S Banerjee, C Zhao, G Garland, A Edlinger… - Nature …, 2024 - nature.com
Soil fungi are a key constituent of global biodiversity and play a pivotal role in
agroecosystems. How arable farming affects soil fungal biogeography and whether it has a …

Global evaluation of commercial arbuscular mycorrhizal inoculants under greenhouse and field conditions

MJ Salomon, R Demarmels, SJ Watts-Williams… - Applied Soil …, 2022 - Elsevier
Arbuscular mycorrhizal fungi (AMF) are plant symbionts that promote plant growth and
provide important plant and ecosystem functions. These abilities have great economical …

Response and interaction of Bradyrhizobium japonicum and arbuscular mycorrhizal fungi in the soybean rhizosphere

RS Meena, V Vijayakumar, GS Yadav, T Mitran - Plant Growth Regulation, 2018 - Springer
Regulatory response and interaction of Bradyrhizobium and arbuscular mycorrhizal fungi
(AMF) play a vital role in rhizospheric soil processes and productivity of soybean (Glycine …

PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives

L Tedersoo, A Tooming‐Klunderud… - New Phytologist, 2018 - Wiley Online Library
Second‐generation, high‐throughput sequencing methods have greatly improved our
understanding of the ecology of soil microorganisms, yet the short barcodes (< 500 bp) …

Arbuscular mycorrhizal fungi and their response to pesticides

K Hage‐Ahmed, K Rosner… - Pest management …, 2019 - Wiley Online Library
Arbuscular mycorrhizal fungi (AMF) form symbioses with the majority of plant species and
can provide multiple benefits to the host plant. In agro‐ecosystems, the abundance and …