aTRAM 2.0: an improved, flexible locus assembler for NGS data
Massive strides have been made in technologies for collecting genome-scale data.
However, tools for efficiently and flexibly assembling raw outputs into downstream analytical …
However, tools for efficiently and flexibly assembling raw outputs into downstream analytical …
Rates of niche and phenotype evolution lag behind diversification in a temperate radiation
RA Folk, RL Stubbs, ME Mort… - Proceedings of the …, 2019 - National Acad Sciences
Environmental change can create opportunities for increased rates of lineage diversification,
but continued species accumulation has been hypothesized to lead to slowdowns via …
but continued species accumulation has been hypothesized to lead to slowdowns via …
An integrated phylogenetic reassessment of the parasitoid superfamily Platygastroidea (Hymenoptera: Proctotrupomorpha) results in a revised familial classification
H Chen, Z Lahey, EJ Talamas, AA Valerio… - Systematic …, 2021 - Wiley Online Library
Abstract The superfamily Platygastroidea (Hymenoptera: Proctotrupomorpha) is a diverse
group of parasitoid wasps that are parasitoids of nine orders of insects as well as spiders …
group of parasitoid wasps that are parasitoids of nine orders of insects as well as spiders …
Phylogenomics of parasitic and nonparasitic lice (Insecta: Psocodea): combining sequence data and exploring compositional bias solutions in next generation data …
RS De Moya, K Yoshizawa, KKO Walden… - Systematic …, 2021 - academic.oup.com
The insect order Psocodea is a diverse lineage comprising both parasitic (Phthiraptera) and
nonparasitic members (Psocoptera). The extreme age and ecological diversity of the group …
nonparasitic members (Psocoptera). The extreme age and ecological diversity of the group …
Power, resolution and bias: recent advances in insect phylogeny driven by the genomic revolution
Our understanding on the phylogenetic relationships of insects has been revolutionised in
the last decade by the proliferation of next generation sequencing technologies (NGS). NGS …
the last decade by the proliferation of next generation sequencing technologies (NGS). NGS …
Phylogenomics from low‐coverage whole‐genome sequencing
Phylogenetic studies are increasingly reliant on next‐generation sequencing.
Transcriptomic and hybrid enrichment sequencing techniques remain the most prevalent …
Transcriptomic and hybrid enrichment sequencing techniques remain the most prevalent …
Whole genome shotgun phylogenomics resolves the pattern and timing of swallowtail butterfly evolution
Evolutionary relationships have remained unresolved in many well-studied groups, even
though advances in next-generation sequencing and analysis, using approaches such as …
though advances in next-generation sequencing and analysis, using approaches such as …
Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae)
Hybridization is a frequent and important force in plant evolution. Next-generation
sequencing (NGS) methods offer new possibilities for clade resolution and ambitious …
sequencing (NGS) methods offer new possibilities for clade resolution and ambitious …
Phylogenomics from whole genome sequences using aTRAM
Novel sequencing technologies are rapidly expanding the size of data sets that can be
applied to phylogenetic studies. Currently the most commonly used phylogenomic …
applied to phylogenetic studies. Currently the most commonly used phylogenomic …
Two bacterial genera, Sodalis and Rickettsia, associated with the seal louse Proechinophthirus fluctus (Phthiraptera: Anoplura)
ABSTRACT Roughly 10% to 15% of insect species host heritable symbiotic bacteria known
as endosymbionts. The lice parasitizing mammals rely on endosymbionts to provide …
as endosymbionts. The lice parasitizing mammals rely on endosymbionts to provide …