Plant DNA methylation: an epigenetic mark in development, environmental interactions, and evolution

F Lucibelli, MC Valoroso, S Aceto - International Journal of Molecular …, 2022 - mdpi.com
DNA methylation is an epigenetic modification of the genome involved in the regulation of
gene expression and modulation of chromatin structure. Plant genomes are widely …

Dynamic DNA methylation in plant growth and development

A Bartels, Q Han, P Nair, L Stacey, H Gaynier… - International journal of …, 2018 - mdpi.com
DNA methylation is an epigenetic modification required for transposable element (TE)
silencing, genome stability, and genomic imprinting. Although DNA methylation has been …

New insights into 5hmC DNA modification: generation, distribution and function

DQ Shi, I Ali, J Tang, WC Yang - Frontiers in genetics, 2017 - frontiersin.org
Dynamic DNA modifications, such as methylation/demethylation on cytosine, are major
epigenetic mechanisms to modulate gene expression in both eukaryotes and prokaryotes. In …

On the origin and evolutionary consequences of gene body DNA methylation

AJ Bewick, L Ji, CE Niederhuth… - Proceedings of the …, 2016 - National Acad Sciences
In plants, CG DNA methylation is prevalent in the transcribed regions of many constitutively
expressed genes (gene body methylation; gbM), but the origin and function of gbM remain …

Downregulation of RdDM during strawberry fruit ripening

J Cheng, Q Niu, B Zhang, K Chen, R Yang, JK Zhu… - Genome biology, 2018 - Springer
Background Recently, DNA methylation was proposed to regulate fleshy fruit ripening.
Fleshy fruits can be distinguished by their ripening process as climacteric fruits, such as …

Identification and analysis of adenine N6-methylation sites in the rice genome

C Zhou, C Wang, H Liu, Q Zhou, Q Liu, Y Guo, T Peng… - Nature plants, 2018 - nature.com
Abstract DNA N 6-methyladenine (6mA) is a non-canonical DNA modification that is present
at low levels in different eukaryotes,,,,,,–, but its prevalence and genomic function in higher …

Genomic imprinting in plants—revisiting existing models

RA Batista, C Köhler - Genes & development, 2020 - genesdev.cshlp.org
Genomic imprinting is an epigenetic phenomenon leading to parentally biased gene
expression. Throughout the years, extensive efforts have been made to characterize the …

Transposable element influences on gene expression in plants

CD Hirsch, NM Springer - Biochimica et Biophysica Acta (BBA)-Gene …, 2017 - Elsevier
Transposable elements (TEs) comprise a major portion of many plant genomes and bursts
of TE movements cause novel genomic variation within species. In order to maintain proper …

[HTML][HTML] Integrating multi-omics data for crop improvement

F Scossa, S Alseekh, AR Fernie - Journal of plant physiology, 2021 - Elsevier
Our agricultural systems are now in urgent need to secure food for a growing world
population. To meet this challenge, we need a better characterization of plant genetic and …

DNA methylation dynamics during early plant life

D Bouyer, A Kramdi, M Kassam, M Heese, A Schnittger… - Genome biology, 2017 - Springer
Background Cytosine methylation is crucial for gene regulation and silencing of
transposable elements in mammals and plants. While this epigenetic mark is extensively …