Whole genome bisulfite sequencing methylome analysis of mulberry (Morus alba) reveals epigenome modifications in response to drought stress

R Li, F Hu, B Li, Y Zhang, M Chen, T Fan, T Wang - Scientific Reports, 2020 - nature.com
DNA methylation plays a significant role in many biological processes. Although some
studies of DNA methylation have been performed in woody plant, none is known about the …

Opportunities and limitations of reduced representation bisulfite sequencing in plant ecological epigenomics

O Paun, KJF Verhoeven, CL Richards - New Phytologist, 2019 - Wiley Online Library
Contents Summary 738 I. Introduction 738 II. RRBS loci as genome‐wide epigenetic
markers 739 III. Exploiting functional annotation of RRBS loci 739 IV. Limitations of RRBS …

A comparative analysis of 5-azacytidine-and zebularine-induced DNA demethylation

PT Griffin, CE Niederhuth… - G3: Genes, Genomes …, 2016 - academic.oup.com
The nonmethylable cytosine analogs, 5-azacytidine and zebularine, are widely used to
inhibit DNA methyltransferase activity and reduce genomic DNA methylation. In this study …

Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation

JM Wendte, Y Zhang, L Ji, X Shi, RR Hazarika… - elife, 2019 - elifesciences.org
In many plant species, a subset of transcribed genes are characterized by strictly CG-context
DNA methylation, referred to as gene body methylation (gbM). The mechanisms that …

Mild drought in the vegetative stage induces phenotypic, gene expression, and DNA methylation plasticity in Arabidopsis but no transgenerational effects

TJM Van Dooren, AB Silveira, E Gilbault… - Journal of …, 2020 - academic.oup.com
There is renewed interest in whether environmentally induced changes in phenotypes can
be heritable. In plants, heritable trait variation can occur without DNA sequence mutations …

DNA demethylases remodel DNA methylation in rice gametes and zygote and are required for reproduction

S Zhou, X Li, Q Liu, Y Zhao, W Jiang, A Wu, DX Zhou - Molecular plant, 2021 - cell.com
Fertilization constitutes a critical step in the plant life cycle during which the gamete
genomes undergo chromatin dynamics in preparation for embryogenesis. In mammals …

Epigenetic marks for mitigating abiotic stresses in plants

S Ali, N Khan, Y Tang - Journal of Plant Physiology, 2022 - Elsevier
Abiotic stressors are one of the major factors affecting agricultural output. Plants have
evolved adaptive systems to respond appropriately to various environmental cues. These …

Diploid and tetraploid genomes of Acorus and the evolution of monocots

L Ma, KW Liu, Z Li, YY Hsiao, Y Qi, T Fu… - Nature …, 2023 - nature.com
Monocots are a major taxon within flowering plants, have unique morphological traits, and
show an extraordinary diversity in lifestyle. To improve our understanding of monocot origin …

DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus

J Vigneaud, A Kohler, MD Sow, A Delaunay… - New …, 2023 - Wiley Online Library
Ectomycorrhizas are an intrinsic component of tree nutrition and responses to environmental
variations. How epigenetic mechanisms might regulate these mutualistic interactions is …

Stochasticity in gene body methylation

C Goeldel, F Johannes - Current Opinion in Plant Biology, 2023 - Elsevier
Gene body methylation (gbM) is a widely conserved epigenetic feature of plant genomes.
Efforts to delineate the mechanisms by which gbM contributes to transcriptional regulation …