How the pan-genome is changing crop genomics and improvement

R Della Coletta, Y Qiu, S Ou, MB Hufford, CN Hirsch - Genome biology, 2021 - Springer
Crop genomics has seen dramatic advances in recent years due to improvements in
sequencing technology, assembly methods, and computational resources. These advances …

Mixed-ploidy species: progress and opportunities in polyploid research

F Kolář, M Čertner, J Suda, P Schönswetter… - Trends in plant …, 2017 - cell.com
Mixed-ploidy species harbor a unique form of genomic and phenotypic variation that
influences ecological interactions, facilitates genetic divergence, and offers insights into the …

The geography and ecology of plant speciation: range overlap and niche divergence in sister species

BL Anacker, SY Strauss - Proceedings of the Royal …, 2014 - royalsocietypublishing.org
A goal of evolutionary biology is to understand the roles of geography and ecology in
speciation. The recent shared ancestry of sister species can leave a major imprint on their …

Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: a genomic and epigenomic perspective

SK Deb, PP Edger, JC Pires, MR McKain - New Phytologist, 2023 - Wiley Online Library
Allopolyploids result from hybridization between different evolutionary lineages coupled with
genome doubling. Homoeologous chromosomes (chromosomes with common shared …

Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes

R Blanc-Mathieu, L Perfus-Barbeoch, JM Aury… - PLoS …, 2017 - journals.plos.org
Root-knot nematodes (genus Meloidogyne) exhibit a diversity of reproductive modes
ranging from obligatory sexual to fully asexual reproduction. Intriguingly, the most …

Genomic Changes in Resynthesized Brassica napus and Their Effect on Gene Expression and Phenotype

RT Gaeta, JC Pires, F Iniguez-Luy, E Leon… - The Plant …, 2007 - academic.oup.com
Many previous studies have provided evidence for genome changes in polyploids, but there
are little data on the overall population dynamics of genome change and whether it causes …

The strength and genetic basis of reproductive isolating barriers in flowering plants

DB Lowry, JL Modliszewski… - … of the Royal …, 2008 - royalsocietypublishing.org
Speciation is characterized by the evolution of reproductive isolation between two groups of
organisms. Understanding the process of speciation requires the quantification of barriers to …

The analysis of polyploid genetic data

PG Meirmans, S Liu, PH van Tienderen - Journal of Heredity, 2018 - academic.oup.com
Though polyploidy is an important aspect of the evolutionary genetics of both plants and
animals, the development of population genetic theory of polyploids has seriously lagged …

Speciation by natural and sexual selection: models and experiments

M Kirkpatrick, V Ravigné - the american naturalist, 2002 - journals.uchicago.edu
A large number of mathematical models have been developed that show how natural and
sexual selection can cause prezygotic isolation to evolve. This article attempts to unify this …

Genome evolution due to allopolyploidization in wheat

M Feldman, AA Levy - Genetics, 2012 - academic.oup.com
The wheat group has evolved through allopolyploidization, namely, through hybridization
among species from the plant genera Aegilops and Triticum followed by genome doubling …