[HTML][HTML] Syntenic gene analysis between Brassica rapa and other Brassicaceae species

F Cheng, J Wu, L Fang, X Wang - Frontiers in plant science, 2012 - frontiersin.org
Chromosomal synteny analysis is important in genome comparison to reveal genomic
evolution of related species. Shared synteny describes genomic fragments from different …

From asymmetrical to balanced genomic diversification during rediploidization: subgenomic evolution in allotetraploid fish

J Luo, J Chai, Y Wen, M Tao, G Lin, X Liu, L Ren… - Science …, 2020 - science.org
A persistent enigma is the rarity of polyploidy in animals, compared to its prevalence in
plants. Although animal polyploids are thought to experience deleterious genomic chaos …

A phylogenomic assessment of ancient polyploidy and genome evolution across the Poales

MR McKain, H Tang, JR McNeal… - Genome biology and …, 2016 - academic.oup.com
Comparisons of flowering plant genomes reveal multiple rounds of ancient polyploidy
characterized by large intragenomic syntenic blocks. Three such whole-genome duplication …

Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish Raphanus raphanistrum and Three Other …

GD Moghe, DE Hufnagel, H Tang, Y Xiao… - The Plant …, 2014 - academic.oup.com
Polyploidization events are frequent among flowering plants, and the duplicate genes
produced via such events contribute significantly to plant evolution. We sequenced the …

A chromosome‐scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes

K Paritosh, SK Yadava, P Singh… - Plant Biotechnology …, 2021 - Wiley Online Library
Brassica juncea (AABB), commonly referred to as mustard, is a natural allopolyploid of two
diploid species—B. rapa (AA) and B. nigra (BB). We report a highly contiguous genome …

DWARF AND ROBUST PLANT regulates plant height via modulating gibberellin biosynthesis in chrysanthemum

X Zhang, L Ding, A Song, S Li, J Liu, W Zhao… - Plant …, 2022 - academic.oup.com
YABBY (YAB) genes are specifically expressed in abaxial cells of lateral organs and
determine abaxial cell fate. However, most studies have focused on few model plants, and …

Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa

F Cheng, C Sun, J Wu, J Schnable… - New …, 2016 - Wiley Online Library
Subgenome dominance is an important phenomenon observed in allopolyploids after whole
genome duplication, in which one subgenome retains more genes as well as contributes …

[HTML][HTML] Genomic insights into the origin, adaptive evolution, and herbicide resistance of Leptochloa chinensis, a devastating tetraploid weedy grass in rice fields

L Wang, X Sun, Y Peng, K Chen, S Wu, Y Guo, J Zhang… - Molecular Plant, 2022 - cell.com
Chinese sprangletop (Leptochloa chinensis), belonging to the grass subfamily
Chloridoideae, is one of the most notorious weeds in rice ecosystems. Here, we report a …

Fractionation and subfunctionalization following genome duplications: mechanisms that drive gene content and their consequences

M Freeling, MJ Scanlon, JE Fowler - Current Opinion in Genetics & …, 2015 - Elsevier
A gene's duplication relaxes selection. Loss of duplicate, low-function DNA (fractionation)
sometimes follows, mostly by deletion in plants, but mostly via the pseudogene pathway in …

On the role of transposable elements in the regulation of gene expression and subgenomic interactions in crop genomes

RA Gill, F Scossa, GJ King, AA Golicz… - Critical Reviews in …, 2021 - Taylor & Francis
Transposable elements (TEs) represent a major and variable portion of plant genomes, and
recent progress in genetics and genomics has highlighted the importance of different TE …