Comparative genomic de‐convolution of the cotton genome revealed a decaploid ancestor and widespread chromosomal fractionation

X Wang, H Guo, J Wang, T Lei, T Liu, Z Wang… - new …, 2016 - Wiley Online Library
The 'apparently'simple genomes of many angiosperms mask complex evolutionary histories.
The reference genome sequence for cotton (Gossypium spp.) revealed a ploidy change of a …

Repeated whole-genome duplication, karyotype reshuffling, and biased retention of stress-responding genes in Buckler mustard

C Geiser, T Mandáková, N Arrigo, MA Lysak… - The Plant …, 2016 - academic.oup.com
Whole-genome duplication (WGD) is usually followed by gene loss and karyotype
repatterning. Despite evidence of new adaptive traits associated with WGD, the …

Genome-wide identification and characterization of aquaporin genes (AQPs) in Chinese cabbage (Brassica rapa ssp. pekinensis)

P Tao, X Zhong, B Li, W Wang, Z Yue, J Lei… - Molecular Genetics and …, 2014 - Springer
Aquaporins (AQPs) are members of a superfamily of integral membrane proteins and play a
significant role in the transportation of small molecules across membranes. However …

The Aquilegia genome reveals a hybrid origin of core eudicots

G Aköz, M Nordborg - Genome Biology, 2019 - Springer
Abstract Background Whole-genome duplications (WGDs) have dominated the evolutionary
history of plants. One consequence of WGD is a dramatic restructuring of the genome as it …

Convergent evolution of polyploid genomes from across the eukaryotic tree of life

Y Hao, J Fleming, J Petterson, E Lyons, PP Edger… - G3, 2022 - academic.oup.com
By modeling the homoeologous gene losses that occurred in 50 genomes deriving from ten
distinct polyploidy events, we show that the evolutionary forces acting on polyploids are …

Evolution of floral diversity: genomics, genes and gamma

AS Chanderbali, BA Berger… - … of the Royal …, 2017 - royalsocietypublishing.org
A salient feature of flowering plant diversification is the emergence of a novel suite of floral
features coinciding with the origin of the most species-rich lineage, Pentapetalae. Advances …

RNA-seq based SNPs for mapping in Brassica juncea (AABB): synteny analysis between the two constituent genomes A (from B. rapa) and B (from B. nigra) shows …

K Paritosh, V Gupta, SK Yadava, P Singh, AK Pradhan… - BMC genomics, 2014 - Springer
Background Brassica juncea (AABB) is an allotetraploid species containing genomes of B.
rapa (AA) and B. nigra (BB). It is a major oilseed crop in South Asia, and grown on …

Quantitative Trait Loci Mapping in Brassica rapa Revealed the Structural and Functional Conservation of Genetic Loci Governing Morphological and Yield Component Traits in …

X Li, N Ramchiary, V Dhandapani, SR Choi… - DNA …, 2013 - academic.oup.com
Brassica rapa is an important crop species that produces vegetables, oilseed, and fodder.
Although many studies reported quantitative trait loci (QTL) mapping, the genes governing …

Polyploidy and the proteome

DE Soltis, BB Misra, S Shan, S Chen… - Biochimica et Biophysica …, 2016 - Elsevier
Although major advances have been made during the past 20 years in our understanding of
the genetic and genomic consequences of polyploidy, our knowledge of polyploidy and the …

Halophytes and heavy metals: A multi‐omics approach to understand the role of gene and genome duplication in the abiotic stress tolerance of Cakile maritima

SK Thomas, KV Hoek, T Ogoti, H Duong… - American Journal of …, 2024 - Wiley Online Library
Premise The origin of diversity is a fundamental biological question. Gene duplications are
one mechanism that provides raw material for the emergence of novel traits, but evolutionary …